[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 13624.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13624	8118174	NM_080686	BAT2		HLA-B associated transcript 2

Fetching correlation data, please wait...
Getting list of correlations for id 13624.
Getting list of p-values for id 13624.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.087 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118174	8178011	NM_080686	BAT2	0.991134	4.061918e-92	7.038085e-88	7.038085e-88
2	8118174	8075343	NM_005877	SF3A1	0.819175	1.292373e-26	2.239294e-22	1.119647e-22
3	8118174	7899220	NM_006015	ARID1A	0.804414	4.919592e-25	8.524178e-21	2.841393e-21
4	8118174	8007757	NM_005892	FMNL1	0.784394	4.292273e-23	7.437222e-19	1.859306e-19
5	8118174	7937900	NM_003156	STIM1	0.781635	7.655117e-23	1.326402e-18	2.652804e-19
6	8118174	8032418	NM_003938	AP3D1	0.758774	6.831645e-21	1.183719e-16	1.972865e-17
7	8118174	7994889	NM_006662	SRCAP	0.756334	1.071244e-20	1.856145e-16	2.651635e-17
8	8118174	8037005	NM_000660	TGFB1	0.741093	1.586826e-19	2.749494e-15	3.436868e-16
9	8118174	8133275	NM_172020	POM121	0.740955	1.624614e-19	2.814969e-15	3.127743e-16
10	8118174	8024358	NM_001319	CSNK1G2	0.737652	2.841228e-19	4.922996e-15	4.922996e-16
11	8118174	7900030	NM_012199	EIF2C1	0.735267	4.232105e-19	7.332969e-15	6.666335e-16
12	8118174	8027169	NM_017660	GATAD2A	0.731417	7.980658e-19	1.382809e-14	1.152340e-15
13	8118174	8012376	NM_014232	VAMP2	0.726228	1.844415e-18	3.195817e-14	2.458321e-15
14	8118174	8029029	NM_007040	HNRNPUL1	0.725475	2.079446e-18	3.603056e-14	2.573611e-15
15	8118174	8140297	NM_001099415	POM121C	0.724024	2.617505e-18	4.535352e-14	3.023568e-15
16	8118174	7949465	NM_021975	RELA	0.719800	5.072406e-18	8.788958e-14	5.493099e-15
17	8118174	8076241	NM_020831	MKL1	0.715183	1.031124e-17	1.786628e-13	1.050958e-14
18	8118174	7909236	NM_004759	MAPKAPK2	0.714839	1.086537e-17	1.882643e-13	1.045913e-14
19	8118174	7976292	NM_024832	RIN3	0.711618	1.766396e-17	3.060634e-13	1.610860e-14
20	8118174	7992692	NM_016333	SRRM2	0.711551	1.784239e-17	3.091552e-13	1.545776e-14
21	8118174	8026315	NM_213560	PKN1	0.708901	2.647884e-17	4.587988e-13	2.184756e-14
22	8118174	7959361	NM_014938	MLXIP	0.706743	3.640155e-17	6.307296e-13	2.866953e-14
23	8118174	8049246	NM_001017915	INPP5D	0.705446	4.401027e-17	7.625660e-13	3.315504e-14
24	8118174	8168215	NM_005120	MED12	0.702248	6.998937e-17	1.212706e-12	5.052941e-14
25	8118174	8010161	NM_006640	SEPT9	0.699826	9.904722e-17	1.716191e-12	6.864765e-14
26	8118174	7962951	NM_003482	MLL2	0.698266	1.236320e-16	2.142172e-12	8.239122e-14
27	8118174	8015460	NM_001096	ACLY	0.696934	1.492413e-16	2.585905e-12	9.577425e-14
28	8118174	7935968	NM_003893	LDB1	0.696310	1.629559e-16	2.823537e-12	1.008406e-13
29	8118174	7941537	NM_018026	PACS1	0.694106	2.218459e-16	3.843923e-12	1.325491e-13
30	8118174	8074647	NM_058004	PI4KA	0.691369	3.241628e-16	5.616769e-12	1.872256e-13
31	8118174	8037695	NM_004819	SYMPK	0.690995	3.412862e-16	5.913465e-12	1.907569e-13
32	8118174	8093230	NM_001145642	KIAA0226	0.690444	3.681349e-16	6.378674e-12	1.993336e-13
33	8118174	8018324	NM_138619	GGA3	0.689449	4.219367e-16	7.310896e-12	2.215423e-13
34	8118174	8142087	NM_020725	ATXN7L1	0.689192	4.370060e-16	7.572003e-12	2.227060e-13
35	8118174	7934459	NM_003635	NDST2	0.687864	5.236548e-16	9.073366e-12	2.592390e-13
36	8118174	7973384	NM_004643	PABPN1	0.686962	5.918139e-16	1.025436e-11	2.848433e-13
37	8118174	8004431	NM_000937	POLR2A	0.685587	7.125082e-16	1.234563e-11	3.336657e-13
38	8118174	7967002	NM_001080855	PXN	0.683786	9.073476e-16	1.572161e-11	4.137266e-13
39	8118174	8143307	NM_022740	HIPK2	0.680697	1.367657e-15	2.369739e-11	6.076254e-13
40	8118174	7921014	NM_005920	MEF2D	0.679081	1.691926e-15	2.931599e-11	7.328999e-13
41	8118174	8076046	NM_012264	TMEM184B	0.676468	2.379664e-15	4.123244e-11	1.005669e-12
42	8118174	8175039	NM_001421	ELF4	0.675676	2.637319e-15	4.569683e-11	1.088020e-12
43	8118174	7959995	NM_015409	EP400	0.672857	3.791124e-15	6.568880e-11	1.527647e-12
44	8118174	8083221	NM_002586	PBX2	0.672582	3.927016e-15	6.804341e-11	1.546441e-12
45	8118174	8163569	NM_030767	AKNA	0.672487	3.975140e-15	6.887725e-11	1.530606e-12
46	8118174	7984871	NM_004383	CSK	0.670066	5.410000e-15	9.373907e-11	2.037806e-12
47	8118174	7949146	NM_004630	SF1	0.669445	5.852464e-15	1.014056e-10	2.157567e-12
48	8118174	8012304	NM_021210	TRAPPC1	0.669056	6.146954e-15	1.065083e-10	2.218922e-12
49	8118174	7923394	NM_138795	ARL8A	0.668143	6.895821e-15	1.194839e-10	2.438447e-12
50	8118174	8172478	NM_017602	OTUD5	0.667544	7.435336e-15	1.288321e-10	2.576641e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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