[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14349.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14349	7919627	NM_003548	HIST2H4A		histone cluster 2, H4a

Fetching correlation data, please wait...
Getting list of correlations for id 14349.
Getting list of p-values for id 14349.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.096 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7919627	7905067	NM_003548	HIST2H4A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7919627	8045514	NM_001001664	SPOPL	0.847535	4.241143e-30	7.348629e-26	3.674315e-26
3	7919627	8099449	NM_033535	FBXL5	0.840766	3.314033e-29	5.742225e-25	1.914075e-25
4	7919627	8152133	NM_015713	RRM2B	0.832460	3.636519e-28	6.300997e-24	1.575249e-24
5	7919627	8099834	NM_003263	TLR1	0.824097	3.565068e-27	6.177193e-23	1.235439e-23
6	7919627	7902822	NM_006256	PKN2	0.823542	4.130434e-27	7.156803e-23	1.192800e-23
7	7919627	8113358	NM_005668	ST8SIA4	0.819476	1.196067e-26	2.072425e-22	2.960607e-23
8	7919627	8148358	NM_016018	PHF20L1	0.819377	1.227007e-26	2.126035e-22	2.657544e-23
9	7919627	8111698	NM_152756	RICTOR	0.818616	1.492517e-26	2.586085e-22	2.873428e-23
10	7919627	8101648	NM_016245	HSD17B11	0.817855	1.813565e-26	3.142365e-22	3.142365e-23
11	7919627	8120943	NM_016230	CYB5R4	0.815363	3.412757e-26	5.913285e-22	5.375713e-23
12	7919627	8138401	NM_015132	SNX13	0.812354	7.229162e-26	1.252597e-21	1.043831e-22
13	7919627	7930470	NM_007373	SHOC2	0.807768	2.212295e-25	3.833243e-21	2.948648e-22
14	7919627	8019885	NM_015295	SMCHD1	0.805991	3.385152e-25	5.865454e-21	4.189610e-22
15	7919627	7978932	NM_006939	SOS2	0.803853	5.614887e-25	9.728916e-21	6.485944e-22
16	7919627	7950838	NM_007166	PICALM	0.803476	6.134669e-25	1.062954e-20	6.643463e-22
17	7919627	7971653	NR_002612	DLEU2	0.801457	9.826714e-25	1.702675e-20	1.001573e-21
18	7919627	7956670	NM_006313	USP15	0.799970	1.385668e-24	2.400948e-20	1.333860e-21
19	7919627	7924107	NM_014873	LPGAT1	0.799262	1.630120e-24	2.824509e-20	1.486584e-21
20	7919627	7954711	NM_018169	C12orf35	0.798955	1.749078e-24	3.030627e-20	1.515314e-21
21	7919627	8167006	NM_006915	RP2	0.798261	2.049131e-24	3.550530e-20	1.690728e-21
22	7919627	8138922	NM_015483	KBTBD2	0.798055	2.147897e-24	3.721661e-20	1.691664e-21
23	7919627	8045919	NM_022826	MARCH7	0.797440	2.469822e-24	4.279460e-20	1.860635e-21
24	7919627	7933877	NM_004241	JMJD1C	0.797233	2.588531e-24	4.485148e-20	1.868812e-21
25	7919627	8022767	NM_014939	KIAA1012	0.794330	4.969521e-24	8.610690e-20	3.444276e-21
26	7919627	8008870	NM_030938	TMEM49	0.793047	6.608483e-24	1.145052e-19	4.404046e-21
27	7919627	8151711	NM_002485	NBN	0.791216	9.890712e-24	1.713764e-19	6.347273e-21
28	7919627	8091523	NM_176894	P2RY13	0.791057	1.024106e-23	1.774468e-19	6.337386e-21
29	7919627	7957759	NM_181861	APAF1	0.790972	1.043408e-23	1.807913e-19	6.234184e-21
30	7919627	7917240	NM_004388	CTBS	0.786377	2.817152e-23	4.881278e-19	1.627093e-20
31	7919627	7925257	NM_000081	LYST	0.786064	3.011428e-23	5.217902e-19	1.683194e-20
32	7919627	7922504	NM_022457	RFWD2	0.785342	3.511261e-23	6.083963e-19	1.901238e-20
33	7919627	8174779	NM_013995	LAMP2	0.784347	4.335356e-23	7.511871e-19	2.276324e-20
34	7919627	8100382	NM_012110	CHIC2	0.783874	4.789862e-23	8.299394e-19	2.440998e-20
35	7919627	8119529	NM_015255	UBR2	0.783854	4.809897e-23	8.334108e-19	2.381174e-20
36	7919627	7929288	NM_019053	EXOC6	0.783311	5.392144e-23	9.342968e-19	2.595269e-20
37	7919627	8135392	NM_012257	HBP1	0.783008	5.746496e-23	9.956954e-19	2.691069e-20
38	7919627	7954436	NM_006152	LRMP	0.782740	6.078286e-23	1.053185e-18	2.771539e-20
39	7919627	8152845	BC017297	FAM49B	0.782137	6.893932e-23	1.194512e-18	3.062850e-20
40	7919627	8166140	NM_152581	MOSPD2	0.781712	7.533734e-23	1.305370e-18	3.263425e-20
41	7919627	7909931	NM_144695	C1orf58	0.781286	8.231550e-23	1.426281e-18	3.478733e-20
42	7919627	8168472	NM_000052	ATP7A	0.779688	1.145853e-22	1.985419e-18	4.727188e-20
43	7919627	8152976	NM_144649	TMEM71	0.779472	1.197787e-22	2.075406e-18	4.826525e-20
44	7919627	7976598	NM_032632	PAPOLA	0.778499	1.462668e-22	2.534364e-18	5.759919e-20
45	7919627	7970907	NM_014887	N4BP2L2	0.778221	1.548504e-22	2.683094e-18	5.962431e-20
46	7919627	8022441	NM_005406	ROCK1	0.778061	1.599778e-22	2.771935e-18	6.025945e-20
47	7919627	7909400	NM_002389	CD46	0.777124	1.936540e-22	3.355442e-18	7.139239e-20
48	7919627	7922889	NM_006469	IVNS1ABP	0.776594	2.156769e-22	3.737033e-18	7.785486e-20
49	7919627	7938592	NM_032228	FAR1	0.775240	2.835054e-22	4.912297e-18	1.002510e-19
50	7919627	8016745	NM_001130528	SPAG9	0.774685	3.169782e-22	5.492281e-18	1.098456e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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