[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
14348	7905067	NM_003548	HIST2H4A		histone cluster 2, H4a
14349	7919627	NM_003548	HIST2H4A		histone cluster 2, H4a

Fetching correlation data, please wait...
Getting list of correlations for id 14348.
Getting list of p-values for id 14348.
1 of 2 done.
Getting list of correlations for id 14349.
Getting list of p-values for id 14349.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.229 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7919627	7905067	NM_003548	HIST2H4A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7905067	7919627	NM_003548	HIST2H4A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7905067	8045514	NM_001001664	SPOPL	0.847535	4.241143e-30	1.469726e-25	4.899086e-26
4	7919627	8045514	NM_001001664	SPOPL	0.847535	4.241143e-30	1.469726e-25	3.674315e-26
5	7905067	8099449	NM_033535	FBXL5	0.840766	3.314033e-29	1.148445e-24	2.296890e-25
6	7919627	8099449	NM_033535	FBXL5	0.840766	3.314033e-29	1.148445e-24	1.914075e-25
7	7919627	8152133	NM_015713	RRM2B	0.832460	3.636519e-28	1.260199e-23	1.800285e-24
8	7905067	8152133	NM_015713	RRM2B	0.832460	3.636519e-28	1.260199e-23	1.575249e-24
9	7919627	8099834	NM_003263	TLR1	0.824097	3.565068e-27	1.235439e-22	1.372709e-23
10	7905067	8099834	NM_003263	TLR1	0.824097	3.565068e-27	1.235439e-22	1.235439e-23
11	7919627	7902822	NM_006256	PKN2	0.823542	4.130434e-27	1.431361e-22	1.301237e-23
12	7905067	7902822	NM_006256	PKN2	0.823542	4.130434e-27	1.431361e-22	1.192800e-23
13	7919627	8113358	NM_005668	ST8SIA4	0.819476	1.196067e-26	4.144849e-22	3.188346e-23
14	7905067	8113358	NM_005668	ST8SIA4	0.819476	1.196067e-26	4.144849e-22	2.960607e-23
15	7905067	8148358	NM_016018	PHF20L1	0.819377	1.227007e-26	4.252070e-22	2.834713e-23
16	7919627	8148358	NM_016018	PHF20L1	0.819377	1.227007e-26	4.252070e-22	2.657544e-23
17	7905067	8111698	NM_152756	RICTOR	0.818616	1.492517e-26	5.172170e-22	3.042453e-23
18	7919627	8111698	NM_152756	RICTOR	0.818616	1.492517e-26	5.172170e-22	2.873428e-23
19	7919627	8101648	NM_016245	HSD17B11	0.817855	1.813565e-26	6.284729e-22	3.307752e-23
20	7905067	8101648	NM_016245	HSD17B11	0.817855	1.813565e-26	6.284729e-22	3.142365e-23
21	7919627	8120943	NM_016230	CYB5R4	0.815363	3.412757e-26	1.182657e-21	5.631700e-23
22	7905067	8120943	NM_016230	CYB5R4	0.815363	3.412757e-26	1.182657e-21	5.375713e-23
23	7919627	8138401	NM_015132	SNX13	0.812354	7.229162e-26	2.505194e-21	1.089215e-22
24	7905067	8138401	NM_015132	SNX13	0.812354	7.229162e-26	2.505194e-21	1.043831e-22
25	7919627	7930470	NM_007373	SHOC2	0.807768	2.212295e-25	7.666486e-21	3.066594e-22
26	7905067	7930470	NM_007373	SHOC2	0.807768	2.212295e-25	7.666486e-21	2.948648e-22
27	7905067	8019885	NM_015295	SMCHD1	0.805991	3.385152e-25	1.173091e-20	4.344781e-22
28	7919627	8019885	NM_015295	SMCHD1	0.805991	3.385152e-25	1.173091e-20	4.189610e-22
29	7919627	7978932	NM_006939	SOS2	0.803853	5.614887e-25	1.945783e-20	6.709597e-22
30	7905067	7978932	NM_006939	SOS2	0.803853	5.614887e-25	1.945783e-20	6.485944e-22
31	7919627	7950838	NM_007166	PICALM	0.803476	6.134669e-25	2.125908e-20	6.857768e-22
32	7905067	7950838	NM_007166	PICALM	0.803476	6.134669e-25	2.125908e-20	6.643463e-22
33	7919627	7971653	NR_002612	DLEU2	0.801457	9.826714e-25	3.405349e-20	1.031924e-21
34	7905067	7971653	NR_002612	DLEU2	0.801457	9.826714e-25	3.405349e-20	1.001573e-21
35	7905067	7956670	NM_006313	USP15	0.799970	1.385668e-24	4.801896e-20	1.371970e-21
36	7919627	7956670	NM_006313	USP15	0.799970	1.385668e-24	4.801896e-20	1.333860e-21
37	7919627	7924107	NM_014873	LPGAT1	0.799262	1.630120e-24	5.649019e-20	1.526762e-21
38	7905067	7924107	NM_014873	LPGAT1	0.799262	1.630120e-24	5.649019e-20	1.486584e-21
39	7919627	7954711	NM_018169	C12orf35	0.798955	1.749078e-24	6.061255e-20	1.554168e-21
40	7905067	7954711	NM_018169	C12orf35	0.798955	1.749078e-24	6.061255e-20	1.515314e-21
41	7905067	8167006	NM_006915	RP2	0.798261	2.049131e-24	7.101060e-20	1.731966e-21
42	7919627	8167006	NM_006915	RP2	0.798261	2.049131e-24	7.101060e-20	1.690728e-21
43	7905067	8138922	NM_015483	KBTBD2	0.798055	2.147897e-24	7.443322e-20	1.731005e-21
44	7919627	8138922	NM_015483	KBTBD2	0.798055	2.147897e-24	7.443322e-20	1.691664e-21
45	7919627	8045919	NM_022826	MARCH7	0.797440	2.469822e-24	8.558920e-20	1.901982e-21
46	7905067	8045919	NM_022826	MARCH7	0.797440	2.469822e-24	8.558920e-20	1.860635e-21
47	7905067	7933877	NM_004241	JMJD1C	0.797233	2.588531e-24	8.970296e-20	1.908574e-21
48	7919627	7933877	NM_004241	JMJD1C	0.797233	2.588531e-24	8.970296e-20	1.868812e-21
49	7905067	8022767	NM_014939	KIAA1012	0.794330	4.969521e-24	1.722138e-19	3.514567e-21
50	7919627	8022767	NM_014939	KIAA1012	0.794330	4.969521e-24	1.722138e-19	3.444276e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
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Remove	"self correlations", i.e. correlations of a variable with itself
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