[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16608.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16608	8089038	NC_001807

Fetching correlation data, please wait...
Getting list of correlations for id 16608.
Getting list of p-values for id 16608.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.071 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8089038	8112914	NC_001807		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8089038	7946563	NC_001807		0.928211	4.997094e-46	8.658465e-42	4.329232e-42
3	8089038	8137008	AK290098	C7orf11	0.894474	8.619711e-38	1.493537e-33	4.978458e-34
4	8089038	8165648	AK290098	C7orf11	0.877132	1.384111e-34	2.398250e-30	5.995624e-31
5	8089038	7946567	ENST00000411307		0.746394	6.350293e-20	1.100315e-15	2.200630e-16
6	8089038	7896752	NC_001807		0.698595	1.179981e-16	2.044552e-12	3.407587e-13
7	8089038	8165667	NC_001807		0.698595	1.179981e-16	2.044552e-12	2.920789e-13
8	8089038	8165682	NC_001807		0.692675	2.706291e-16	4.689190e-12	5.861487e-13
9	8089038	8112918	ENST00000411192		0.666607	8.361086e-15	1.448725e-10	1.609695e-11
10	8089038	8165672	L23320	RFC1	0.664361	1.105784e-14	1.915991e-10	1.915991e-11
11	8089038	8043375	NC_001807		0.649394	6.712378e-14	1.163054e-9	1.057322e-10
12	8089038	8165644	NC_001807		0.629909	6.073318e-13	1.052324e-8	8.769365e-10
13	8089038	8118667	ENST00000416347		0.601089	1.205003e-11	2.087908e-7	1.606083e-8
14	8089038	8165684	NC_001807		0.595713	2.036531e-11	3.528698e-7	2.520498e-8
15	8089038	8114211			0.575494	1.347208e-10	2.334307e-6	1.556205e-7
16	8089038	8165650	NC_001807		0.562793	4.139029e-10	7.171696e-6	4.482310e-7
17	8089038	7931469	NM_138499	PWWP2B	-0.525975	8.312802e-9	1.440359e-4	8.472701e-6
18	8089038	7992789	NM_016639	TNFRSF12A	-0.512945	2.211320e-8	3.831554e-4	2.128641e-5
19	8089038	8141166	AK125166	LOC441268	-0.512931	2.213559e-8	3.835434e-4	2.018649e-5
20	8089038	8165680	NC_001807		0.511575	2.445141e-8	4.236695e-4	2.118348e-5
21	8089038	7983924			0.510423	2.659889e-8	4.608790e-4	2.194662e-5
22	8089038	7930168			-0.508445	3.071186e-8	5.321444e-4	2.418838e-5
23	8089038	8067007	NM_021109	TMSB4X	0.507140	3.374984e-8	5.847835e-4	2.542537e-5
24	8089038	8165709	NC_001807		0.503976	4.235759e-8	7.339299e-4	3.058041e-5
25	8089038	7931582	NM_152911	PAOX	-0.503797	4.290294e-8	7.433793e-4	2.973517e-5
26	8089038	7924823	NM_023007	JMJD4	-0.498026	6.453364e-8	1.118174e-3	4.300671e-5
27	8089038	8062480	NR_003239	SNHG11	-0.495282	7.815432e-8	1.354180e-3	5.015481e-5
28	8089038	8038804	NM_152353	CLDND2	-0.489960	1.127644e-7	1.953869e-3	6.978105e-5
29	8089038	8058333	ENST00000433982		0.489226	1.185520e-7	2.054150e-3	7.083277e-5
30	8089038	8142098	NM_020725	ATXN7L1	0.489150	1.191685e-7	2.064833e-3	6.882776e-5
31	8089038	7974471	ENST00000254302		0.482073	1.919614e-7	3.326116e-3	1.072941e-4
32	8089038	7950195	hsa-mir-139		-0.481250	2.027696e-7	3.513389e-3	1.097934e-4
33	8089038	7901746			-0.480897	2.075751e-7	3.596654e-3	1.089895e-4
34	8089038	7967658			0.480353	2.152006e-7	3.728781e-3	1.096700e-4
35	8089038	8165653	AK293612	HNRNPM	0.478937	2.363158e-7	4.094645e-3	1.169898e-4
36	8089038	7962703	NM_001844	COL2A1	-0.475645	2.932870e-7	5.081784e-3	1.411607e-4
37	8089038	7936023	BC126459	C10orf95	-0.470068	4.207060e-7	7.289573e-3	1.970155e-4
38	8089038	8067867	ENST00000364942		-0.469606	4.333432e-7	7.508538e-3	1.975931e-4
39	8089038	8100782			-0.469258	4.431163e-7	7.677876e-3	1.968686e-4
40	8089038	7937247	NM_130784	SYCE1	-0.468995	4.506164e-7	7.807830e-3	1.951957e-4
41	8089038	8028397	NM_174905	FAM98C	-0.468154	4.754530e-7	8.238175e-3	2.009311e-4
42	8089038	7925028	NM_198552	FAM89A	-0.465789	5.524775e-7	9.572777e-3	2.279233e-4
43	8089038	8064857	ENST00000436669		0.464362	6.045619e-7	1.047524e-2	2.436103e-4
44	8089038	8035842	NM_003430	ZNF91	0.463608	6.339244e-7	1.098401e-2	2.496366e-4
45	8089038	8027665	NM_001080436	WTIP	-0.462431	6.824687e-7	1.182514e-2	2.627808e-4
46	8089038	8036004	NM_004364	CEBPA	-0.462325	6.869986e-7	1.190362e-2	2.587744e-4
47	8089038	8038362	NM_178449	PTH2	-0.461646	7.168063e-7	1.242010e-2	2.642575e-4
48	8089038	7976182	NM_022054	KCNK13	-0.461489	7.238643e-7	1.254240e-2	2.612999e-4
49	8089038	8026763	NM_198580	SLC27A1	-0.461014	7.456028e-7	1.291906e-2	2.636543e-4
50	8089038	7903676	NM_153340	ATXN7L2	-0.460315	7.787658e-7	1.349368e-2	2.698735e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation