[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16689.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16689	8165694	NC_001807

Fetching correlation data, please wait...
Getting list of correlations for id 16689.
Getting list of p-values for id 16689.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.079 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8165694	7911335	NC_001807		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8165694	8045287			0.871985	1.000332e-33	1.733274e-29	8.666372e-30
3	8165694	8013521			0.853930	5.536594e-31	9.593256e-27	3.197752e-27
4	8165694	8165696	NC_001807		0.815301	3.466016e-26	6.005565e-22	1.501391e-22
5	8165694	7911337	NC_001807		0.815301	3.466016e-26	6.005565e-22	1.201113e-22
6	8165694	7973871	NC_001807		0.815301	3.466016e-26	6.005565e-22	1.000928e-22
7	8165694	7896748	NC_001807		0.796162	3.296405e-24	5.711681e-20	8.159544e-21
8	8165694	8045804			0.794609	4.669983e-24	8.091680e-20	1.011460e-20
9	8165694	7911339	NC_001807		0.777761	1.700905e-22	2.947158e-18	3.274620e-19
10	8165694	8165698	NC_001807		0.777761	1.700905e-22	2.947158e-18	2.947158e-19
11	8165694	8156358			0.761695	3.958486e-21	6.858869e-17	6.235335e-18
12	8165694	8013523			0.760168	5.270012e-21	9.131350e-17	7.609458e-18
13	8165694	8165658	U18810	VIPR2	0.746740	5.976938e-20	1.035624e-15	7.966339e-17
14	8165694	8133038	NC_001807		0.736518	3.435613e-19	5.952887e-15	4.252062e-16
15	8165694	8136654	NC_001807		0.705810	4.173312e-17	7.231098e-13	4.820732e-14
16	8165694	8045533			0.642280	1.527755e-13	2.647141e-9	1.654463e-10
17	8165694	7911343	AF284753	UIMC1	0.626273	9.005810e-13	1.560437e-8	9.179040e-10
18	8165694	8165703	AF284753	UIMC1	0.626273	9.005810e-13	1.560437e-8	8.669093e-10
19	8165694	8113879	AK054976	HINT1	0.613347	3.508912e-12	6.079892e-8	3.199943e-9
20	8165694	7896746	NC_001807		0.594920	2.198573e-11	3.809467e-7	1.904733e-8
21	8165694	8165680	NC_001807		0.581689	7.655592e-11	1.326484e-6	6.316592e-8
22	8165694	8055486			0.580438	8.589231e-11	1.488256e-6	6.764800e-8
23	8165694	8165656	NC_001807		0.580397	8.621783e-11	1.493896e-6	6.495202e-8
24	8165694	8113120	BC028919	TOB2	0.572490	1.764417e-10	3.057206e-6	1.273836e-7
25	8165694	8165707	BC028919	TOB2	0.572490	1.764417e-10	3.057206e-6	1.222882e-7
26	8165694	7973867			0.571491	1.928815e-10	3.342057e-6	1.285407e-7
27	8165694	8079368	ENST00000411353		0.557773	6.367797e-10	1.103348e-5	4.086475e-7
28	8165694	8147988			0.554953	8.085394e-10	1.400956e-5	5.003415e-7
29	8165694	7944765			0.554125	8.669067e-10	1.502089e-5	5.179618e-7
30	8165694	8108422	ENST00000362675		0.547909	1.454112e-9	2.519539e-5	8.398464e-7
31	8165694	8173156			0.545053	1.837838e-9	3.184421e-5	1.027233e-6
32	8165694	8165700	NC_001807		0.533188	4.750028e-9	8.230374e-5	2.571992e-6
33	8165694	7907349	ENST00000411006		0.520179	1.291096e-8	2.237083e-4	6.779039e-6
34	8165694	8114211			0.515152	1.879058e-8	3.255844e-4	9.576012e-6
35	8165694	8108180	ENST00000458878		0.508384	3.084666e-8	5.344800e-4	1.527086e-5
36	8165694	8107204			0.500649	5.365487e-8	9.296779e-4	2.582439e-5
37	8165694	8139816			0.500498	5.422890e-8	9.396241e-4	2.539525e-5
38	8165694	8055016	AF234262		0.498120	6.411175e-8	1.110864e-3	2.923327e-5
39	8165694	8132998			0.488007	1.288075e-7	2.231848e-3	5.722688e-5
40	8165694	8013354			0.487404	1.341797e-7	2.324931e-3	5.812327e-5
41	8165694	8058664			0.486660	1.411121e-7	2.445050e-3	5.963537e-5
42	8165694	8101699	AK092450		0.486369	1.439136e-7	2.493591e-3	5.937121e-5
43	8165694	8091188	ENST00000365255		0.484276	1.656793e-7	2.870725e-3	6.676105e-5
44	8165694	8082442			0.480330	2.155295e-7	3.734480e-3	8.487455e-5
45	8165694	hsa-miR-328	MI0000804		-0.472091	3.693728e-7	6.400123e-3	1.422250e-4
46	8165694	8031827	NM_032828	ZNF587	0.466828	5.172925e-7	8.963127e-3	1.948506e-4
47	8165694	7976333	NM_015676	C14orf109	0.461450	7.255934e-7	1.257236e-2	2.674969e-4
48	8165694	8165682	NC_001807		0.460035	7.924462e-7	1.373071e-2	2.860566e-4
49	8165694	8002758	ENST00000384794		0.455618	1.040561e-6	1.802979e-2	3.679550e-4
50	8165694	7928907			0.451718	1.319388e-6	2.286104e-2	4.572208e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation