[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 17024.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17024	7981724	BC021276	IGHD		immunoglobulin heavy constant delta

Fetching correlation data, please wait...
Getting list of correlations for id 17024.
Getting list of p-values for id 17024.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.088 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7981724	7981730	AB001736	IGLJ3	0.985134	1.273955e-80	2.207382e-76	2.207382e-76
2	7981724	7981740	BC073771	IGHA1	0.975170	2.952208e-69	5.115290e-65	2.557645e-65
3	7981724	7981728	ENST00000390601		0.968332	6.857299e-64	1.188164e-59	3.960548e-60
4	7981724	7981722	AK128476	IGHA1	0.965714	3.839785e-62	6.653195e-58	1.663299e-58
5	7981724	7981718	BC020240	IGHM	0.950352	4.966063e-54	8.604697e-50	1.720939e-50
6	7981724	7995263	AF067420	IGHA1	0.946762	1.650516e-52	2.859848e-48	4.766414e-49
7	7981724	7981720	AK301358	IGHG1	0.941321	2.158449e-50	3.739945e-46	5.342778e-47
8	7981724	8001104	ENST00000390603		0.924881	4.737347e-45	8.208402e-41	1.026050e-41
9	7981724	7981601	AK301335	IGHV4-31	0.918668	2.418386e-43	4.190338e-39	4.655931e-40
10	7981724	8053690	BC032451	IGK@	0.904296	7.268036e-40	1.259333e-35	1.259333e-36
11	7981724	7981737	AF067420	IGHA1	0.892597	2.035004e-37	3.526052e-33	3.205502e-34
12	7981724	8043459	ENST00000390273		0.892167	2.472043e-37	4.283309e-33	3.569424e-34
13	7981724	8043476	ENST00000390273		0.890412	5.422909e-37	9.396275e-33	7.227904e-34
14	7981724	8043465	BC029444	IGKC	0.876604	1.702693e-34	2.950256e-30	2.107326e-31
15	7981724	8043449	BC030813	IGK@	0.872450	8.396697e-34	1.454896e-29	9.699304e-31
16	7981724	8043468	AY510107	IGKC	0.870589	1.685600e-33	2.920639e-29	1.825399e-30
17	7981724	8043480	ENST00000455863		0.863143	2.468603e-32	4.277349e-28	2.516087e-29
18	7981724	8053735	ENST00000416474		0.858418	1.250716e-31	2.167115e-27	1.203953e-28
19	7981724	8043431	AF113887	IGKC	0.858148	1.369440e-31	2.372829e-27	1.248857e-28
20	7981724	8043470	L37725		0.857060	1.971970e-31	3.416833e-27	1.708416e-28
21	7981724	8043360	BC030813	IGK@	0.834574	2.001518e-28	3.468030e-24	1.651443e-25
22	7981724	8161563	ENST00000457995		0.818693	1.463164e-26	2.535224e-22	1.152374e-23
23	7981724	8161580	ENST00000457995		0.806062	3.328994e-25	5.768149e-21	2.507891e-22
24	7981724	8043484	ENST00000416474		0.804703	4.595185e-25	7.962077e-21	3.317532e-22
25	7981724	8001102	ENST00000438532		0.783709	4.959203e-23	8.592811e-19	3.437124e-20
26	7981724	7981732	ENST00000338567		0.779169	1.274929e-22	2.209069e-18	8.496418e-20
27	7981724	8100827	NM_144646	IGJ	0.747005	5.706514e-20	9.887678e-16	3.662103e-17
28	7981724	8043474	ENST00000390249		0.728658	1.248804e-18	2.163803e-14	7.727869e-16
29	7981724	8161568	ENST00000457995		0.720484	4.560536e-18	7.902041e-14	2.724842e-15
30	7981724	8043433	BC022362	IGKC	0.706926	3.543538e-17	6.139888e-13	2.046629e-14
31	7981724	7981183	NM_021966	TCL1A	0.687419	5.563154e-16	9.639277e-12	3.109444e-13
32	7981724	7921319	NM_052938	FCRL1	0.686107	6.643385e-16	1.151099e-11	3.597185e-13
33	7981724	8116559	NM_002460	IRF4	0.676417	2.395741e-15	4.151100e-11	1.257909e-12
34	7981724	7935270	NM_013314	BLNK	0.676151	2.479718e-15	4.296608e-11	1.263708e-12
35	7981724	8043438	BC093097	IGKC	0.674872	2.926106e-15	5.070065e-11	1.448590e-12
36	7981724	8029136	NM_001783	CD79A	0.671017	4.795073e-15	8.308423e-11	2.307895e-12
37	7981724	8138489	NM_018719	CDCA7L	0.669929	5.504916e-15	9.538367e-11	2.577937e-12
38	7981724	7944335	NM_001716	CXCR5	0.663870	1.175020e-14	2.035956e-10	5.357780e-12
39	7981724	8150276	NM_001102559	PPAPDC1B	0.660313	1.819124e-14	3.151997e-10	8.082042e-12
40	7981724	8027837	NM_001771	CD22	0.659105	2.107466e-14	3.651606e-10	9.129014e-12
41	7981724	7940287	NM_152866	MS4A1	0.650068	6.201637e-14	1.074558e-9	2.620872e-11
42	7981724	8054254	NM_002285	AFF3	0.649965	6.277525e-14	1.087707e-9	2.589778e-11
43	7981724	8026787	NM_173544	FAM129C	0.642176	1.546017e-13	2.678783e-9	6.229728e-11
44	7981724	8011415	NM_002561	P2RX5	0.629635	6.257504e-13	1.084238e-8	2.464177e-10
45	7981724	8099721	NM_015187	SEL1L3	0.618265	2.106842e-12	3.650525e-8	8.112279e-10
46	7981724	8112428	NM_005582	CD180	0.615765	2.733577e-12	4.736468e-8	1.029667e-9
47	7981724	7906786	NM_032738	FCRLA	0.612281	3.914695e-12	6.782992e-8	1.443190e-9
48	7981724	8115543	NM_024007	EBF1	0.611505	4.238330e-12	7.343754e-8	1.529949e-9
49	7981724	7938370	NM_015055	SWAP70	0.610860	4.526597e-12	7.843234e-8	1.600660e-9
50	7981724	8056343	NM_014900	COBLL1	0.605882	7.485377e-12	1.296991e-7	2.593982e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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