[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6183	7944335	NM_001716	CXCR5		chemokine (C-X-C motif) receptor 5

Fetching correlation data, please wait...
Getting list of correlations for id 6183.
Getting list of p-values for id 6183.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7944335	8029136	NM_001783	CD79A	0.837758	8.014844e-29	1.388732e-24	1.388732e-24
2	7944335	8027837	NM_001771	CD22	0.792924	6.791500e-24	1.176763e-19	5.883816e-20
3	7944335	7921319	NM_052938	FCRL1	0.785990	3.059596e-23	5.301362e-19	1.767121e-19
4	7944335	8161211	NM_016734	PAX5	0.772237	5.166903e-22	8.952693e-18	2.238173e-18
5	7944335	8011415	NM_002561	P2RX5	0.762399	3.466935e-21	6.007159e-17	1.201432e-17
6	7944335	8054254	NM_002285	AFF3	0.759778	5.668536e-21	9.821872e-17	1.636979e-17
7	7944335	8026787	NM_173544	FAM129C	0.758545	7.128351e-21	1.235129e-16	1.764470e-17
8	7944335	7981183	NM_021966	TCL1A	0.754553	1.482987e-20	2.569572e-16	3.211964e-17
9	7944335	7906786	NM_032738	FCRLA	0.745284	7.706856e-20	1.335367e-15	1.483741e-16
10	7944335	7940287	NM_152866	MS4A1	0.742274	1.296472e-19	2.246396e-15	2.246396e-16
11	7944335	7935270	NM_013314	BLNK	0.736074	3.700085e-19	6.411137e-15	5.828306e-16
12	7944335	8115543	NM_024007	EBF1	0.734873	4.518389e-19	7.829013e-15	6.524177e-16
13	7944335	8085984	NM_017784	OSBPL10	0.734645	4.692511e-19	8.130714e-15	6.254395e-16
14	7944335	7981601	AK301335	IGHV4-31	0.722320	3.423408e-18	5.931739e-14	4.236956e-15
15	7944335	8017511	NM_000626	CD79B	0.721424	3.938790e-18	6.824742e-14	4.549828e-15
16	7944335	8144625	NM_001715	BLK	0.719679	5.168499e-18	8.955457e-14	5.597161e-15
17	7944335	8033420	NM_002002	FCER2	0.696512	1.583775e-16	2.744206e-12	1.614239e-13
18	7944335	7981718	BC020240	IGHM	0.690810	3.501067e-16	6.066298e-12	3.370166e-13
19	7944335	8056343	NM_014900	COBLL1	0.682774	1.038538e-15	1.799475e-11	9.470920e-13
20	7944335	8150276	NM_001102559	PPAPDC1B	0.680132	1.473626e-15	2.553353e-11	1.276676e-12
21	7944335	7981730	AB001736	IGLJ3	0.678940	1.723545e-15	2.986386e-11	1.422089e-12
22	7944335	7921298	NM_030764	FCRL2	0.676655	2.322627e-15	4.024416e-11	1.829280e-12
23	7944335	8138489	NM_018719	CDCA7L	0.670822	4.914961e-15	8.516154e-11	3.702675e-12
24	7944335	7981740	BC073771	IGHA1	0.669292	5.966230e-15	1.033769e-10	4.307370e-12
25	7944335	7981724	BC021276	IGHD	0.663870	1.175020e-14	2.035956e-10	8.143826e-12
26	7944335	8043468	AY510107	IGKC	0.663123	1.288572e-14	2.232708e-10	8.587339e-12
27	7944335	8001104	ENST00000390603		0.662002	1.479247e-14	2.563092e-10	9.492933e-12
28	7944335	7981728	ENST00000390601		0.661663	1.542245e-14	2.672248e-10	9.543742e-12
29	7944335	8172280	NM_032591	SLC9A7	0.651719	5.105593e-14	8.846461e-10	3.050504e-11
30	7944335	8081657	NM_001004196	CD200	0.649974	6.270902e-14	1.086559e-9	3.621864e-11
31	7944335	8096617	NM_017935	BANK1	0.648800	7.195029e-14	1.246683e-9	4.021557e-11
32	7944335	7981732	ENST00000338567		0.647967	7.930206e-14	1.374067e-9	4.293959e-11
33	7944335	8043470	L37725		0.643802	1.283498e-13	2.223917e-9	6.739144e-11
34	7944335	8122756	NM_001029884	PLEKHG1	0.640927	1.782003e-13	3.087677e-9	9.081402e-11
35	7944335	8052399	NM_022893	BCL11A	0.639087	2.194582e-13	3.802553e-9	1.086444e-10
36	7944335	7993825	NM_001012391	RUNDC2B	0.636753	2.852180e-13	4.941972e-9	1.372770e-10
37	7944335	7981720	AK301358	IGHG1	0.636566	2.912430e-13	5.046368e-9	1.363883e-10
38	7944335	8043476	ENST00000390273		0.635372	3.327169e-13	5.764986e-9	1.517102e-10
39	7944335	8043360	BC030813	IGK@	0.630197	5.885137e-13	1.019718e-8	2.614661e-10
40	7944335	7981722	AK128476	IGHA1	0.629727	6.194791e-13	1.073371e-8	2.683429e-10
41	7944335	8043459	ENST00000390273		0.627353	8.015816e-13	1.388900e-8	3.387562e-10
42	7944335	7995263	AF067420	IGHA1	0.624737	1.062062e-12	1.840234e-8	4.381510e-10
43	7944335	8069178	NR_027673	ADARB1	0.623471	1.215819e-12	2.106650e-8	4.899185e-10
44	7944335	8161004	NM_001782	CD72	0.622020	1.418599e-12	2.458007e-8	5.586379e-10
45	7944335	8120501	NM_001858	COL19A1	0.618638	2.026150e-12	3.510710e-8	7.801577e-10
46	7944335	7981737	AF067420	IGHA1	0.617079	2.384603e-12	4.131802e-8	8.982177e-10
47	7944335	8043449	BC030813	IGK@	0.611530	4.227173e-12	7.324422e-8	1.558388e-9
48	7944335	7994576	NR_002939	RUNDC2C	0.610999	4.462616e-12	7.732375e-8	1.610911e-9
49	7944335	8053690	BC032451	IGK@	0.610160	4.860818e-12	8.422339e-8	1.718845e-9
50	7944335	8043431	AF113887	IGKC	0.605673	7.643535e-12	1.324395e-7	2.648791e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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