[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 1722.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1722	8173732	NM_015975	TAF9B		TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa

Fetching correlation data, please wait...
Getting list of correlations for id 1722.
Getting list of p-values for id 1722.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8173732	8176263	NM_015975	TAF9B	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8173732	7964271	NM_000946	PRIM1	0.733566	5.608810e-19	9.718385e-15	4.859193e-15
3	8173732	7968658	NM_181503	EXOSC8	0.726452	1.779657e-18	3.083612e-14	1.027871e-14
4	8173732	8047815	NM_001136194	FASTKD2	0.720771	4.361210e-18	7.556669e-14	1.889167e-14
5	8173732	8027416	NM_003796	C19orf2	0.718625	6.083904e-18	1.054158e-13	2.108316e-14
6	8173732	8116929	NM_002948	RPL15	0.716022	9.074307e-18	1.572305e-13	2.620509e-14
7	8173732	7946812	NM_001017	RPS13	0.715844	9.324173e-18	1.615599e-13	2.307999e-14
8	8173732	8152465	NM_003756	EIF3H	0.715032	1.055167e-17	1.828289e-13	2.285361e-14
9	8173732	7973840	NM_001030055	ARHGAP5	0.714110	1.213484e-17	2.102603e-13	2.336226e-14
10	8173732	7939093	NM_181706	DNAJC24	0.713715	1.288204e-17	2.232071e-13	2.232071e-14
11	8173732	8030351	NM_012423	RPL13A	0.713508	1.329180e-17	2.303069e-13	2.093700e-14
12	8173732	8041149	NM_015131	WDR43	0.713449	1.341047e-17	2.323631e-13	1.936360e-14
13	8173732	8011832	NM_002532	NUP88	0.712434	1.562755e-17	2.707785e-13	2.082912e-14
14	8173732	7966448	NM_138341	TMEM116	0.712154	1.630001e-17	2.824302e-13	2.017359e-14
15	8173732	7986765	NM_000969	RPL5	0.711057	1.921151e-17	3.328778e-13	2.219185e-14
16	8173732	7961964	NM_018164	C12orf11	0.710967	1.947208e-17	3.373927e-13	2.108704e-14
17	8173732	8150818	NM_006756	TCEA1	0.709822	2.309684e-17	4.001990e-13	2.354112e-14
18	8173732	7916928	NM_030816	ANKRD13C	0.708745	2.709800e-17	4.695270e-13	2.608483e-14
19	8173732	8027241	NM_021047	ZNF253	0.704987	4.706205e-17	8.154441e-13	4.291811e-14
20	8173732	8121118	NM_012115	CASP8AP2	0.704680	4.920829e-17	8.526320e-13	4.263160e-14
21	8173732	7950544	NM_004705	PRKRIR	0.704229	5.254861e-17	9.105098e-13	4.335761e-14
22	8173732	8171747	NM_001412	EIF1AX	0.703598	5.758540e-17	9.977822e-13	4.535373e-14
23	8173732	8022170	NM_001024662	RPL6	0.703538	5.808677e-17	1.006470e-12	4.375954e-14
24	8173732	7969428	NM_006002	UCHL3	0.702918	6.353448e-17	1.100862e-12	4.586925e-14
25	8173732	8057554	NM_014412	CACYBP	0.702438	6.809660e-17	1.179910e-12	4.719639e-14
26	8173732	7966534	NM_001024662	RPL6	0.702241	7.005336e-17	1.213814e-12	4.668517e-14
27	8173732	7960131	ENST00000425052		0.701878	7.381697e-17	1.279027e-12	4.737136e-14
28	8173732	8116969	NM_016167	NOL7	0.701725	7.545456e-17	1.307401e-12	4.669290e-14
29	8173732	8121161	NM_015323	KIAA0776	0.700341	9.202190e-17	1.594464e-12	5.498150e-14
30	8173732	7926609	NM_005180	BMI1	0.700090	9.538356e-17	1.652711e-12	5.509037e-14
31	8173732	8078270	NM_002948	RPL15	0.699993	9.671086e-17	1.675709e-12	5.405513e-14
32	8173732	7902345	NM_138467	TYW3	0.699140	1.092009e-16	1.892123e-12	5.912885e-14
33	8173732	8144894	NM_018142	INTS10	0.698965	1.119637e-16	1.939995e-12	5.878772e-14
34	8173732	7985044	NM_173469	UBE2Q2	0.698807	1.145039e-16	1.984009e-12	5.835321e-14
35	8173732	8063283	NM_001316	CSE1L	0.697260	1.425366e-16	2.469732e-12	7.056377e-14
36	8173732	8147156	NM_007013	WWP1	0.696850	1.510196e-16	2.616716e-12	7.268655e-14
37	8173732	8069532	NM_006948	HSPA13	0.696664	1.550362e-16	2.686313e-12	7.260305e-14
38	8173732	7932433	NM_182543	NSUN6	0.695874	1.732371e-16	3.001679e-12	7.899156e-14
39	8173732	8111814	NM_000997	RPL37	0.694163	2.200823e-16	3.813367e-12	9.777863e-14
40	8173732	8083333	NM_032025	EIF2A	0.693806	2.312981e-16	4.007703e-12	1.001926e-13
41	8173732	7930380	NM_016824	ADD3	0.693068	2.562804e-16	4.440570e-12	1.083066e-13
42	8173732	7917103	NM_015534	ZZZ3	0.692681	2.704265e-16	4.685680e-12	1.115638e-13
43	8173732	7918847	NM_001102396	SIKE1	0.692457	2.789452e-16	4.833284e-12	1.124019e-13
44	8173732	7970569	NM_014363	SACS	0.691936	2.997889e-16	5.194443e-12	1.180555e-13
45	8173732	8084694	NM_001967	EIF4A2	0.691418	3.219749e-16	5.578859e-12	1.239746e-13
46	8173732	8151281	NM_014294	TRAM1	0.691299	3.272894e-16	5.670944e-12	1.232814e-13
47	8173732	8109821	NM_006013	RPL10	0.691130	3.350118e-16	5.804750e-12	1.235053e-13
48	8173732	8067978	NM_021130	PPIA	0.690901	3.457487e-16	5.990787e-12	1.248081e-13
49	8173732	8107458	NM_016144	COMMD10	0.689359	4.271225e-16	7.400752e-12	1.510358e-13
50	8173732	8096808	NM_017918	CCDC109B	0.688862	4.571166e-16	7.920460e-12	1.584092e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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