[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7189	7903010	NM_000969	RPL5		ribosomal protein L5
16954	8076511	NM_000969	RPL5		ribosomal protein L5
17088	7986765	NM_000969	RPL5		ribosomal protein L5

Fetching correlation data, please wait...
Getting list of correlations for id 7189.
Getting list of p-values for id 7189.
1 of 3 done.
Getting list of correlations for id 16954.
Getting list of p-values for id 16954.
2 of 3 done.
Getting list of correlations for id 17088.
Getting list of p-values for id 17088.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.320 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8076511	7986765	NM_000969	RPL5	0.937165	6.583812e-49	3.422331e-44	3.422331e-44
2	7986765	8076511	NM_000969	RPL5	0.937165	6.583812e-49	3.422331e-44	1.711166e-44
3	7986765	8022170	NM_001024662	RPL6	0.912532	8.741236e-42	4.543782e-37	1.514594e-37
4	7986765	7966534	NM_001024662	RPL6	0.904213	7.582426e-40	3.941421e-35	9.853553e-36
5	7986765	8078270	NM_002948	RPL15	0.902527	1.783136e-39	9.268920e-35	1.853784e-35
6	7903010	7986765	NM_000969	RPL5	0.900663	4.504861e-39	2.341672e-34	3.902786e-35
7	7986765	7903010	NM_000969	RPL5	0.900663	4.504861e-39	2.341672e-34	3.345245e-35
8	7986765	8152465	NM_003756	EIF3H	0.878129	9.343061e-35	4.856616e-30	6.070770e-31
9	7903010	8173513	NM_001007	RPS4X	0.869316	2.697960e-33	1.402426e-28	1.558251e-29
10	7986765	8173513	NM_001007	RPS4X	0.865855	9.462204e-33	4.918548e-28	4.918548e-29
11	7903010	8076511	NM_000969	RPL5	0.864947	1.307566e-32	6.796859e-28	6.178963e-29
12	8076511	7903010	NM_000969	RPL5	0.864947	1.307566e-32	6.796859e-28	5.664049e-29
13	7986765	8022814	NM_002136	HNRNPA1	0.863272	2.359069e-32	1.226268e-27	9.432829e-29
14	7986765	8034313	NR_002944	HNRPA1L-2	0.861453	4.441383e-32	2.308675e-27	1.649054e-28
15	8076511	8078270	NM_002948	RPL15	0.858369	1.271197e-31	6.607809e-27	4.405206e-28
16	7986765	7995574	NM_002136	HNRNPA1	0.857172	1.899778e-31	9.875237e-27	6.172023e-28
17	7903010	8022170	NM_001024662	RPL6	0.855080	3.799841e-31	1.975195e-26	1.161879e-27
18	7903010	7966534	NM_001024662	RPL6	0.854240	5.004296e-31	2.601283e-26	1.445157e-27
19	7903010	8152465	NM_003756	EIF3H	0.849215	2.506714e-30	1.303015e-25	6.857975e-27
20	7986765	7939137	NM_006360	EIF3M	0.844749	1.000179e-29	5.199029e-25	2.599515e-26
21	7986765	7956743	NM_001034996	RPL14	0.844576	1.054378e-29	5.480763e-25	2.609887e-26
22	8076511	8022170	NM_001024662	RPL6	0.843250	1.576388e-29	8.194224e-25	3.724647e-26
23	7986765	8068168	NM_000454	SOD1	0.841740	2.479991e-29	1.289124e-24	5.604888e-26
24	8076511	8152465	NM_003756	EIF3H	0.841030	3.064064e-29	1.592731e-24	6.636380e-26
25	8076511	8036813	NM_001005851	ZNF780B	0.840639	3.441338e-29	1.788842e-24	7.155369e-26
26	8076511	8022814	NM_002136	HNRNPA1	0.840493	3.593079e-29	1.867718e-24	7.183532e-26
27	8076511	7995574	NM_002136	HNRNPA1	0.837359	8.999160e-29	4.677854e-24	1.732538e-25
28	8076511	8034313	NR_002944	HNRPA1L-2	0.837241	9.312078e-29	4.840511e-24	1.728754e-25
29	7986765	7916562	NM_002136	HNRNPA1	0.836739	1.076370e-28	5.595079e-24	1.929337e-25
30	8076511	8173513	NM_001007	RPS4X	0.836279	1.228995e-28	6.388441e-24	2.129480e-25
31	8076511	7966534	NM_001024662	RPL6	0.835671	1.463496e-28	7.607401e-24	2.454000e-25
32	7986765	7901418	NM_152265	BTF3L4	0.834857	1.846807e-28	9.599886e-24	2.999964e-25
33	7986765	8047518	NM_015934	NOP58	0.834370	2.121117e-28	1.102578e-23	3.341146e-25
34	7986765	8027416	NM_003796	C19orf2	0.833543	2.681229e-28	1.393729e-23	4.099204e-25
35	7986765	8036813	NM_001005851	ZNF780B	0.833236	2.923698e-28	1.519767e-23	4.342192e-25
36	7986765	7957540	NM_014050	MRPL42	0.832730	3.370614e-28	1.752079e-23	4.866886e-25
37	7986765	7955646	NM_001417	EIF4B	0.832305	3.797641e-28	1.974052e-23	5.335275e-25
38	7986765	7965048	NM_004537	NAP1L1	0.829672	7.891150e-28	4.101899e-23	1.079447e-24
39	7986765	8047815	NM_001136194	FASTKD2	0.829446	8.398812e-28	4.365787e-23	1.119432e-24
40	7986765	8084694	NM_001967	EIF4A2	0.828345	1.135398e-27	5.901914e-23	1.475479e-24
41	8076511	8156604	BC022957	C9orf102	0.828299	1.149818e-27	5.976869e-23	1.457773e-24
42	7986765	8158372	NM_003011	SET	0.827044	1.617419e-27	8.407508e-23	2.001788e-24
43	7986765	8096808	NM_017918	CCDC109B	0.826206	2.027849e-27	1.054096e-22	2.451386e-24
44	8076511	7917103	NM_015534	ZZZ3	0.825559	2.412948e-27	1.254274e-22	2.850624e-24
45	8076511	8027416	NM_003796	C19orf2	0.825271	2.607070e-27	1.355181e-22	3.011513e-24
46	7986765	8097480	NM_057175	NAA15	0.825007	2.797910e-27	1.454382e-22	3.161699e-24
47	7986765	7901038	NM_001012	RPS8	0.824607	3.112712e-27	1.618019e-22	3.442593e-24
48	7986765	8063283	NM_001316	CSE1L	0.822762	5.075975e-27	2.638543e-22	5.496964e-24
49	7903010	8109821	NM_006013	RPL10	0.822171	5.929124e-27	3.082018e-22	6.289832e-24
50	8076511	7911989	NM_000983	RPL22	0.821869	6.417549e-27	3.335906e-22	6.671813e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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