[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 17234.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17234	7904486	AK294414	NBPF9		neuroblastoma breakpoint family, member 9

Fetching correlation data, please wait...
Getting list of correlations for id 17234.
Getting list of p-values for id 17234.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.095 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7904486	7904506	AK095030	NBPF9	0.991754	9.914880e-94	1.717951e-89	1.717951e-89
2	7904486	7904562	AK294944	NBPF14	0.991314	1.424687e-92	2.468556e-88	1.234278e-88
3	7904486	7904500	ENST00000436832		0.990618	7.413025e-91	1.284455e-86	4.281516e-87
4	7904486	7904569	AK299612		0.974754	6.879036e-69	1.191931e-64	2.979827e-65
5	7904486	7919412	NM_001102663	NBPF16	0.970265	2.810698e-65	4.870096e-61	9.740193e-62
6	7904486	7913380	NM_032264	NBPF3	0.962621	3.035906e-60	5.260315e-56	8.767191e-57
7	7904486	7919438	NM_001102663	NBPF16	0.959203	2.522437e-58	4.370626e-54	6.243751e-55
8	7904486	7904999	NM_001102663	NBPF16	0.954029	1.036419e-55	1.795803e-51	2.244753e-52
9	7904486	7904976	NM_001102663	NBPF16	0.952962	3.288648e-55	5.698240e-51	6.331377e-52
10	7904486	7904874	NM_183372	NBPF11	0.949870	8.069744e-54	1.398245e-49	1.398245e-50
11	7904486	7904574	NM_001039703	NBPF10	0.940131	5.888490e-50	1.020299e-45	9.275443e-47
12	7904486	7919271	NM_183372	NBPF11	0.940078	6.154119e-50	1.066324e-45	8.886035e-47
13	7904486	7919351	NM_183372	NBPF11	0.939984	6.656375e-50	1.153350e-45	8.871924e-47
14	7904486	7912808	NM_001102663	NBPF16	0.923064	1.548800e-44	2.683605e-40	1.916861e-41
15	7904486	7904702	NM_203458	NOTCH2NL	0.865916	9.258306e-33	1.604187e-28	1.069458e-29
16	7904486	8143988	NM_170606	MLL3	0.789888	1.321867e-23	2.290399e-19	1.431499e-20
17	7904486	8073214	NM_001024843	TNRC6B	0.768557	1.064765e-21	1.844918e-17	1.085246e-18
18	7904486	8109843	NM_004946	DOCK2	0.759304	6.191635e-21	1.072825e-16	5.960137e-18
19	7904486	8079869	NM_005778	RBM5	0.756085	1.121366e-20	1.942991e-16	1.022627e-17
20	7904486	7985695	NM_006738	AKAP13	0.754825	1.411214e-20	2.445211e-16	1.222605e-17
21	7904486	8012961	NM_006311	NCOR1	0.749233	3.852772e-20	6.675698e-16	3.178904e-17
22	7904486	7983054	NR_027911	CAPN3	0.746926	5.785366e-20	1.002430e-15	4.556502e-17
23	7904486	7907310	NM_015172	BAT2L2	0.745981	6.825988e-20	1.182739e-15	5.142343e-17
24	7904486	7919888	NM_001038707	CDC42SE1	0.745591	7.306177e-20	1.265941e-15	5.274755e-17
25	7904486	7986250	NM_001271	CHD2	0.744760	8.442005e-20	1.462746e-15	5.850985e-17
26	7904486	8108510	NM_020690	ANKHD1-EIF4EBP3	0.740552	1.740078e-19	3.015034e-15	1.159628e-16
27	7904486	8146579	NM_017780	CHD7	0.735463	4.096400e-19	7.097833e-15	2.628827e-16
28	7904486	7913001	NM_020765	UBR4	0.735396	4.141974e-19	7.176798e-15	2.563142e-16
29	7904486	8009014	NM_006852	TLK2	0.733884	5.321974e-19	9.221384e-15	3.179788e-16
30	7904486	7972069	NM_015057	MYCBP2	0.724842	2.299675e-18	3.984647e-14	1.328216e-15
31	7904486	7989516	NM_003922	HERC1	0.723141	3.008714e-18	5.213198e-14	1.681677e-15
32	7904486	7988286	NM_025137	SPG11	0.720516	4.537872e-18	7.862770e-14	2.457116e-15
33	7904486	8047865	NM_015040	PIKFYVE	0.719261	5.514026e-18	9.554154e-14	2.895198e-15
34	7904486	8153959	NM_203447	DOCK8	0.719253	5.521006e-18	9.566246e-14	2.813602e-15
35	7904486	7964246	NR_003046	SNORD59B	0.718937	5.798140e-18	1.004644e-13	2.870411e-15
36	7904486	7958207	BC013935		0.718306	6.391310e-18	1.107422e-13	3.076173e-15
37	7904486	8057990	NM_153697	ANKRD44	0.718125	6.571718e-18	1.138682e-13	3.077518e-15
38	7904486	8050719	NM_006277	ITSN2	0.718112	6.585281e-18	1.141032e-13	3.002715e-15
39	7904486	7975368	NM_001039465	SRSF5	0.717829	6.878947e-18	1.191915e-13	3.056193e-15
40	7904486	7987192	NM_001042496	SLC12A6	0.717433	7.310765e-18	1.266736e-13	3.166841e-15
41	7904486	7920766	NM_018489	ASH1L	0.715641	9.615971e-18	1.666159e-13	4.063803e-15
42	7904486	8135277	NM_182931	MLL5	0.715589	9.692726e-18	1.679459e-13	3.998711e-15
43	7904486	7966706	NM_015335	MED13L	0.714755	1.100425e-17	1.906706e-13	4.434200e-15
44	7904486	8096385	NM_014606	HERC3	0.713939	1.245323e-17	2.157771e-13	4.904025e-15
45	7904486	7926127	NM_001025077	CELF2	0.712032	1.659945e-17	2.876186e-13	6.391525e-15
46	7904486	7898278	NM_015001	SPEN	0.711730	1.736868e-17	3.009472e-13	6.542330e-15
47	7904486	8062492	NM_020336	RALGAPB	0.709104	2.569394e-17	4.451989e-13	9.472316e-15
48	7904486	7935910	NM_012215	MGEA5	0.706429	3.811533e-17	6.604243e-13	1.375884e-14
49	7904486	8155246	ENST00000363632		0.704452	5.087484e-17	8.815083e-13	1.798997e-14
50	7904486	7951140	AY358248	LOC100131541	0.703184	6.114339e-17	1.059432e-12	2.118863e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation