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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 5 variables:
id Label1 AccNum GeneSym Info Gene Name
16405 7912808 NM_001102663 NBPF16 link to infopage neuroblastoma breakpoint family, member 16
16879 7919412 NM_001102663 NBPF16 link to infopage neuroblastoma breakpoint family, member 16
16907 7919438 NM_001102663 NBPF16 link to infopage neuroblastoma breakpoint family, member 16
16910 7904999 NM_001102663 NBPF16 link to infopage neuroblastoma breakpoint family, member 16
16916 7904976 NM_001102663 NBPF16 link to infopage neuroblastoma breakpoint family, member 16

Fetching correlation data, please wait...
Getting list of correlations for id 16405.
Getting list of p-values for id 16405.
1 of 5 done.
Getting list of correlations for id 16879.
Getting list of p-values for id 16879.
2 of 5 done.
Getting list of correlations for id 16907.
Getting list of p-values for id 16907.
3 of 5 done.
Getting list of correlations for id 16910.
Getting list of p-values for id 16910.
4 of 5 done.
Getting list of correlations for id 16916.
Getting list of p-values for id 16916.
5 of 5 done.
Calculating corrections for multiple testing (n=86635), please wait...
Done; whole program took 0.482 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7904976 7904999 NM_001102663 NBPF16 link to infopage 0.998539 2.270945e-132 1.967434e-127 1.967434e-127
2 7904999 7904976 NM_001102663 NBPF16 link to infopage 0.998539 2.270945e-132 1.967434e-127 9.837168e-128
3 7904976 7919438 NM_001102663 NBPF16 link to infopage 0.995729 2.119941e-108 1.836611e-103 6.122037e-104
4 7919438 7904976 NM_001102663 NBPF16 link to infopage 0.995729 2.119941e-108 1.836611e-103 4.591528e-104
5 7919438 7904999 NM_001102663 NBPF16 link to infopage 0.995613 8.373103e-108 7.254038e-103 1.450808e-103
6 7904999 7919438 NM_001102663 NBPF16 link to infopage 0.995613 8.373103e-108 7.254038e-103 1.209006e-103
7 7919438 7904574 NM_001039703 NBPF10 link to infopage 0.995590 1.098036e-107 9.512837e-103 1.358977e-103
8 7904999 7919271 NM_183372 NBPF11 link to infopage 0.993757 6.233961e-100 5.400792e-95 6.750991e-96
9 7904976 7919271 NM_183372 NBPF11 link to infopage 0.993307 2.215119e-98 1.919069e-93 2.132299e-94
10 7904999 7904574 NM_001039703 NBPF10 link to infopage 0.993246 3.534523e-98 3.062134e-93 3.062134e-94
11 7919438 7919271 NM_183372 NBPF11 link to infopage 0.993089 1.145803e-97 9.926668e-93 9.024243e-94
12 7904999 7919351 NM_183372 NBPF11 link to infopage 0.993066 1.363241e-97 1.181044e-92 9.842032e-94
13 7904976 7904574 NM_001039703 NBPF10 link to infopage 0.992885 5.104067e-97 4.421909e-92 3.401468e-93
14 7919438 7919351 NM_183372 NBPF11 link to infopage 0.992717 1.690930e-96 1.464937e-91 1.046384e-92
15 7904976 7919351 NM_183372 NBPF11 link to infopage 0.992549 5.447792e-96 4.719695e-91 3.146463e-92
16 7912808 7919351 NM_183372 NBPF11 link to infopage 0.992213 5.241929e-95 4.541345e-90 2.838341e-91
17 7912808 7919271 NM_183372 NBPF11 link to infopage 0.992034 1.678977e-94 1.454581e-89 8.556362e-91
18 7919412 7919438 NM_001102663 NBPF16 link to infopage 0.991987 2.271753e-94 1.968133e-89 1.093407e-90
19 7919438 7919412 NM_001102663 NBPF16 link to infopage 0.991987 2.271753e-94 1.968133e-89 1.035860e-90
20 7904999 7919412 NM_001102663 NBPF16 link to infopage 0.991099 4.984443e-92 4.318272e-87 2.159136e-88
21 7919412 7904999 NM_001102663 NBPF16 link to infopage 0.991099 4.984443e-92 4.318272e-87 2.056320e-88
22 7904976 7919412 NM_001102663 NBPF16 link to infopage 0.989177 1.123127e-87 9.730210e-83 4.422823e-84
23 7919412 7904976 NM_001102663 NBPF16 link to infopage 0.989177 1.123127e-87 9.730210e-83 4.230526e-84
24 7912808 7904574 NM_001039703 NBPF10 link to infopage 0.989162 1.202707e-87 1.041965e-82 4.341522e-84
25 7919412 7904574 NM_001039703 NBPF10 link to infopage 0.988072 1.633019e-85 1.414766e-80 5.659064e-82
26 7919412 7919271 NM_183372 NBPF11 link to infopage 0.986293 2.001728e-82 1.734197e-77 6.669990e-79
27 7904999 7912808 NM_001102663 NBPF16 link to infopage 0.986281 2.097244e-82 1.816948e-77 6.729435e-79
28 7912808 7904999 NM_001102663 NBPF16 link to infopage 0.986281 2.097244e-82 1.816948e-77 6.489099e-79
29 7912808 7919438 NM_001102663 NBPF16 link to infopage 0.986262 2.247092e-82 1.946768e-77 6.712992e-79
30 7919438 7912808 NM_001102663 NBPF16 link to infopage 0.986262 2.247092e-82 1.946768e-77 6.489226e-79
31 7919412 7919351 NM_183372 NBPF11 link to infopage 0.986234 2.496332e-82 2.162697e-77 6.976443e-79
32 7912808 7904976 NM_001102663 NBPF16 link to infopage 0.984751 4.671095e-80 4.046803e-75 1.264626e-76
33 7904976 7912808 NM_001102663 NBPF16 link to infopage 0.984751 4.671095e-80 4.046803e-75 1.226304e-76
34 7912808 7919412 NM_001102663 NBPF16 link to infopage 0.979568 1.435845e-73 1.243944e-68 3.658659e-70
35 7919412 7912808 NM_001102663 NBPF16 link to infopage 0.979568 1.435845e-73 1.243944e-68 3.554126e-70
36 7919412 7904486 AK294414 NBPF9 link to infopage 0.970265 2.810698e-65 2.435048e-60 6.764023e-62
37 7919438 7904486 AK294414 NBPF9 link to infopage 0.959203 2.522437e-58 2.185313e-53 5.906251e-55
38 7919412 7904500 ENST00000436832 link to infopage 0.958396 6.773371e-58 5.868110e-53 1.544239e-54
39 7904999 7904486 AK294414 NBPF9 link to infopage 0.954029 1.036419e-55 8.979014e-51 2.302311e-52
40 7904976 7904486 AK294414 NBPF9 link to infopage 0.952962 3.288648e-55 2.849120e-50 7.122800e-52
41 7919412 7904506 AK095030 NBPF9 link to infopage 0.952941 3.362424e-55 2.913036e-50 7.104967e-52
42 7919412 7904562 AK294944 NBPF14 link to infopage 0.952622 4.722050e-55 4.090948e-50 9.740353e-52
43 7919412 7904874 NM_183372 NBPF11 link to infopage 0.943998 2.086617e-51 1.807741e-46 4.204049e-48
44 7919438 7904500 ENST00000436832 link to infopage 0.942384 8.648901e-51 7.492976e-46 1.702949e-47
45 7904999 7904500 ENST00000436832 link to infopage 0.940916 3.044812e-50 2.637873e-45 5.861940e-47
46 7904976 7904500 ENST00000436832 link to infopage 0.938532 2.197436e-49 1.903749e-44 4.138585e-46
47 7904999 7904874 NM_183372 NBPF11 link to infopage 0.937119 6.831270e-49 5.918271e-44 1.259207e-45
48 7919438 7904874 NM_183372 NBPF11 link to infopage 0.936787 8.884759e-49 7.697311e-44 1.603606e-45
49 7919412 7904569 AK299612 link to infopage 0.934805 4.139702e-48 3.586430e-43 7.319246e-45
50 7919438 7904506 AK095030 NBPF9 link to infopage 0.933700 9.567207e-48 8.288550e-43 1.657710e-44

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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