[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 17321.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17321	7946565	NC_001807

Fetching correlation data, please wait...
Getting list of correlations for id 17321.
Getting list of p-values for id 17321.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.072 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7946565	8174970	NC_001807		0.996519	5.690877e-113	9.860583e-109	9.860583e-109
2	7946565	8112916	NC_001807		0.996519	5.690877e-113	9.860583e-109	4.930292e-109
3	7946565	8165650	NC_001807		0.665932	9.095576e-15	1.575990e-10	5.253302e-11
4	7946565	7917645	NR_003287	RN28S1	0.587185	4.590657e-11	7.954232e-7	1.988558e-7
5	7946565	7942791	NR_003287	RN28S1	0.577573	1.115867e-10	1.933463e-6	3.866926e-7
6	7946565	8131811			-0.537026	3.507775e-9	6.077923e-5	1.012987e-5
7	7946565	7945652	NM_001012708	KRTAP5-3	-0.528284	6.958979e-9	1.205782e-4	1.722546e-5
8	7946565	8173444	NM_000206	IL2RG	0.511873	2.392273e-8	4.145091e-4	5.181364e-5
9	7946565	8169350	ENST00000419932		0.506480	3.539609e-8	6.133080e-4	6.814533e-5
10	7946565	8031483	NM_001136134	RPL28	0.504718	4.016917e-8	6.960112e-4	6.960112e-5
11	7946565	8165661	NC_001807		0.501712	4.976404e-8	8.622615e-4	7.838741e-5
12	7946565	7978187	NM_014169	CHMP4A	-0.492475	9.490296e-8	1.644384e-3	1.370320e-4
13	7946565	8083032	ENST00000415794		0.484304	1.653695e-7	2.865357e-3	2.204121e-4
14	7946565	8165665	NC_001807		0.479376	2.295635e-7	3.977647e-3	2.841176e-4
15	7946565	7991766	NM_000558	HBA1	0.478595	2.417112e-7	4.188129e-3	2.792086e-4
16	7946565	7991762	NM_000558	HBA1	0.478595	2.417112e-7	4.188129e-3	2.617581e-4
17	7946565	8107115			-0.478147	2.489342e-7	4.313284e-3	2.537226e-4
18	7946565	7979127			-0.475840	2.895712e-7	5.017401e-3	2.787445e-4
19	7946565	8045208	NM_001083538	POTEE	0.474035	3.256907e-7	5.643244e-3	2.970128e-4
20	7946565	8099668			-0.469767	4.289042e-7	7.431622e-3	3.715811e-4
21	7946565	7954310	NR_003286	RN18S1	0.468727	4.583875e-7	7.942480e-3	3.782133e-4
22	7946565	7995342			-0.466196	5.384595e-7	9.329889e-3	4.240858e-4
23	7946565	7995320			-0.463798	6.263953e-7	1.085355e-2	4.718935e-4
24	7946565	8107125	ENST00000384539		-0.457227	9.426843e-7	1.633389e-2	6.805788e-4
25	7946565	8027778	NM_144779	FXYD5	0.456817	9.667887e-7	1.675155e-2	6.700619e-4
26	7946565	7995338			-0.456660	9.761545e-7	1.691383e-2	6.505319e-4
27	7946565	7920123	NM_002966	S100A10	0.456379	9.931308e-7	1.720798e-2	6.373325e-4
28	7946565	7937476	NM_001004	RPLP2	0.444325	2.052652e-6	3.556631e-2	1.270225e-3
29	7946565	8165644	NC_001807		0.444242	2.062748e-6	3.574124e-2	1.232456e-3
30	7946565	7946033	NM_000518	HBB	0.444007	2.091630e-6	3.624167e-2	1.208056e-3
31	7946565	7929593	NR_026712	RPL13AP5	0.443265	2.185197e-6	3.786292e-2	1.221384e-3
32	7946565	8124082	ENST00000364545		-0.442024	2.350532e-6	4.072767e-2	1.272740e-3
33	7946565	7995330			-0.441670	2.399795e-6	4.158126e-2	1.260038e-3
34	7946565	7950762			-0.441172	2.470775e-6	4.281112e-2	1.259150e-3
35	7946565	7995328			-0.439919	2.658263e-6	4.605973e-2	1.315992e-3
36	7946565	7922414	NR_003942	SNORD76	0.437628	3.036579e-6	5.261481e-2	1.461522e-3
37	7946565	7954434	ENST00000410223		-0.437288	3.096856e-6	5.365923e-2	1.450249e-3
38	7946565	8163731			-0.435737	3.386456e-6	5.867712e-2	1.544135e-3
39	7946565	8094144	NM_030930	UNC93B1	-0.435225	3.487562e-6	6.042899e-2	1.549461e-3
40	7946565	8151411	ENST00000411016		-0.432411	4.096084e-6	7.097284e-2	1.774321e-3
41	7946565	7996883	NM_005329	HAS3	-0.431243	4.376984e-6	7.584000e-2	1.849756e-3
42	7946565	7967563	NM_021009	UBC	0.429088	4.943455e-6	8.565524e-2	2.039410e-3
43	7946565	7946567	ENST00000411307		0.428575	5.088132e-6	8.816207e-2	2.050281e-3
44	7946565	8055220	NM_001083538	POTEE	0.427207	5.494137e-6	9.519692e-2	2.163566e-3
45	7946565	8142405			-0.426380	5.753794e-6	9.969599e-2	2.215466e-3
46	7946565	8052370	ENST00000365474		-0.425140	6.165495e-6	1.068295e-1	2.322381e-3
47	7946565	8139264	NR_003655	POLR2J4	0.423763	6.654653e-6	1.153052e-1	2.453302e-3
48	7946565	7995352			-0.423517	6.746065e-6	1.168891e-1	2.435189e-3
49	7946565	8116520	NM_006098	GNB2L1	0.420319	8.044105e-6	1.393802e-1	2.844494e-3
50	7946565	7899849	ENST00000401937		0.417239	9.513550e-6	1.648413e-1	3.296826e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation