[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
17326	7991762	NM_000558	HBA1		hemoglobin, alpha 1
17327	7991766	NM_000558	HBA1		hemoglobin, alpha 1

Fetching correlation data, please wait...
Getting list of correlations for id 17326.
Getting list of p-values for id 17326.
1 of 2 done.
Getting list of correlations for id 17327.
Getting list of p-values for id 17327.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7991766	7991762	NM_000558	HBA1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7991762	7991766	NM_000558	HBA1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7991766	7917645	NR_003287	RN28S1	0.690647	3.580247e-16	1.240699e-11	4.135663e-12
4	7991762	7917645	NR_003287	RN28S1	0.690647	3.580247e-16	1.240699e-11	3.101747e-12
5	7991766	7946033	NM_000518	HBB	0.667290	7.675224e-15	2.659772e-10	5.319545e-11
6	7991762	7946033	NM_000518	HBB	0.667290	7.675224e-15	2.659772e-10	4.432954e-11
7	7991766	8169350	ENST00000419932		0.597556	1.703125e-11	5.902009e-7	8.431441e-8
8	7991762	8169350	ENST00000419932		0.597556	1.703125e-11	5.902009e-7	7.377511e-8
9	7991762	8106096			0.535523	3.951985e-9	1.369521e-4	1.521690e-5
10	7991766	8106096			0.535523	3.951985e-9	1.369521e-4	1.369521e-5
11	7991762	7946565	NC_001807		0.478595	2.417112e-7	8.376259e-3	7.614781e-4
12	7991766	7946565	NC_001807		0.478595	2.417112e-7	8.376259e-3	6.980216e-4
13	7991762	8112916	NC_001807		0.475593	2.942931e-7	1.019843e-2	7.844948e-4
14	7991762	8174970	NC_001807		0.475593	2.942931e-7	1.019843e-2	7.284595e-4
15	7991766	8174970	NC_001807		0.475593	2.942931e-7	1.019843e-2	6.798955e-4
16	7991766	8112916	NC_001807		0.475593	2.942931e-7	1.019843e-2	6.374020e-4
17	7991766	7967620	NR_003287	RN28S1	0.461217	7.362278e-7	2.551324e-2	1.500779e-3
18	7991762	7967620	NR_003287	RN28S1	0.461217	7.362278e-7	2.551324e-2	1.417402e-3
19	7991766	7942791	NR_003287	RN28S1	0.444228	2.064462e-6	7.154187e-2	3.765361e-3
20	7991762	7942791	NR_003287	RN28S1	0.444228	2.064462e-6	7.154187e-2	3.577093e-3
21	7991762	8084982	NR_024388	LOC152217	0.397030	2.748674e-5	9.525255e-1	4.535836e-2
22	7991766	8084982	NR_024388	LOC152217	0.397030	2.748674e-5	9.525255e-1	4.329661e-2
23	7991766	7987466			0.394084	3.190303e-5	1.105568e+0	4.806815e-2
24	7991762	7987466			0.394084	3.190303e-5	1.105568e+0	4.606531e-2
25	7991766	8106352	XM_001718519	LOC100129566	0.392026	3.537307e-5	1.225818e+0	4.903274e-2
26	7991762	8106352	XM_001718519	LOC100129566	0.392026	3.537307e-5	1.225818e+0	4.714686e-2
27	7991762	8026024	NM_004317	ASNA1	0.387020	4.534308e-5	1.571319e+0	5.819700e-2
28	7991766	8026024	NM_004317	ASNA1	0.387020	4.534308e-5	1.571319e+0	5.611854e-2
29	7991762	8026729	NM_024050	DDA1	0.372658	9.044662e-5	3.134337e+0	1.080806e-1
30	7991766	8026729	NM_024050	DDA1	0.372658	9.044662e-5	3.134337e+0	1.044779e-1
31	7991766	8073511	ENST00000384086		0.369548	1.045930e-4	3.624564e+0	1.169214e-1
32	7991762	8073511	ENST00000384086		0.369548	1.045930e-4	3.624564e+0	1.132676e-1
33	7991762	7946041	NM_000519	HBD	0.368418	1.102239e-4	3.819700e+0	1.157485e-1
34	7991766	7946041	NM_000519	HBD	0.368418	1.102239e-4	3.819700e+0	1.123441e-1
35	7991766	8121739	ENST00000410717		0.367975	1.125068e-4	3.898810e+0	1.113946e-1
36	7991762	8121739	ENST00000410717		0.367975	1.125068e-4	3.898810e+0	1.083003e-1
37	7991766	8118826	NM_003093	SNRPC	0.366822	1.186611e-4	4.112083e+0	1.111374e-1
38	7991762	8118826	NM_003093	SNRPC	0.366822	1.186611e-4	4.112083e+0	1.082127e-1
39	7991762	8000738	NM_178863	KCTD13	0.366123	1.225394e-4	4.246479e+0	1.088841e-1
40	7991766	8000738	NM_178863	KCTD13	0.366123	1.225394e-4	4.246479e+0	1.061620e-1
41	7991766	8031152	NM_001013	RPS9	0.361773	1.494581e-4	5.179321e+0	1.263249e-1
42	7991762	8031152	NM_001013	RPS9	0.361773	1.494581e-4	5.179321e+0	1.233172e-1
43	7991762	8018297	NM_014595	NT5C	0.356308	1.910427e-4	6.620395e+0	1.539627e-1
44	7991766	8018297	NM_014595	NT5C	0.356308	1.910427e-4	6.620395e+0	1.504635e-1
45	7991762	8150960	ENST00000459488		-0.354724	2.049583e-4	7.102624e+0	1.578361e-1
46	7991766	8150960	ENST00000459488		-0.354724	2.049583e-4	7.102624e+0	1.544049e-1
47	7991766	7992402	NM_004548	NDUFB10	0.352049	2.306155e-4	7.991750e+0	1.700372e-1
48	7991762	7992402	NM_004548	NDUFB10	0.352049	2.306155e-4	7.991750e+0	1.664948e-1
49	7991762	7905088	NM_003517	HIST2H2AC	0.350619	2.455170e-4	8.508146e+0	1.736356e-1
50	7991766	7905088	NM_003517	HIST2H2AC	0.350619	2.455170e-4	8.508146e+0	1.701629e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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