[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 2489.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2489	8179861	NM_025257	SLC44A4		solute carrier family 44, member 4

Fetching correlation data, please wait...
Getting list of correlations for id 2489.
Getting list of p-values for id 2489.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.093 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179861	8178653	NM_025257	SLC44A4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179861	8125149	NM_025257	SLC44A4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8179861	8112668	NM_016591	GCNT4	-0.548446	1.391172e-9	2.410483e-5	8.034943e-6
4	8179861	8048835	NM_020194	MFF	-0.540186	2.725183e-9	4.721924e-5	1.180481e-5
5	8179861	8019108	NM_014984	AZI1	0.539464	2.887796e-9	5.003684e-5	1.000737e-5
6	8179861	8097570	NM_032557	USP38	-0.536941	3.531569e-9	6.119150e-5	1.019858e-5
7	8179861	8068510	ENST00000362936		0.535829	3.857403e-9	6.683722e-5	9.548175e-6
8	8179861	8139244	NM_018224	C7orf44	-0.533311	4.704389e-9	8.151295e-5	1.018912e-5
9	8179861	8066985	AK299337	FAM65C	0.532031	5.200848e-9	9.011510e-5	1.001279e-5
10	8179861	7996430	NM_001040667	HSF4	0.530617	5.807439e-9	1.006255e-4	1.006255e-5
11	8179861	7916836	NM_001018067	SERBP1	-0.529860	6.159606e-9	1.067275e-4	9.702500e-6
12	8179861	7937498	NM_173584	EFCAB4A	0.529424	6.371295e-9	1.103954e-4	9.199619e-6
13	8179861	8150089	NM_016127	TMEM66	-0.528420	6.886347e-9	1.193197e-4	9.178442e-6
14	8179861	7932860			0.528174	7.018703e-9	1.216131e-4	8.686647e-6
15	8179861	8054135	NM_012214	MGAT4A	-0.526386	8.054708e-9	1.395639e-4	9.304262e-6
16	8179861	8113881	NM_016340	RAPGEF6	-0.525878	8.374367e-9	1.451027e-4	9.068916e-6
17	8179861	8149918	NM_000742	CHRNA2	0.522120	1.115123e-8	1.932173e-4	1.136573e-5
18	8179861	7933047	NM_003591	CUL2	-0.521741	1.147556e-8	1.988371e-4	1.104650e-5
19	8179861	8038804	NM_152353	CLDND2	0.520862	1.226336e-8	2.124873e-4	1.118354e-5
20	8179861	8076677	NM_138415	PHF21B	0.518013	1.518793e-8	2.631613e-4	1.315806e-5
21	8179861	8112139	NM_002184	IL6ST	-0.518007	1.519415e-8	2.632691e-4	1.253662e-5
22	8179861	8101013	NM_015436	RCHY1	-0.516498	1.700409e-8	2.946298e-4	1.339226e-5
23	8179861	8044263	NM_006267	RANBP2	-0.516312	1.724116e-8	2.987376e-4	1.298859e-5
24	8179861	8131539	NM_018374	TMEM106B	-0.515394	1.845666e-8	3.197986e-4	1.332494e-5
25	8179861	8073104	NM_004711	SYNGR1	0.515212	1.870728e-8	3.241410e-4	1.296564e-5
26	8179861	8117140	NM_017774	CDKAL1	-0.514485	1.974062e-8	3.420457e-4	1.315561e-5
27	8179861	8168578	NR_024062	UBE2DNL	0.512985	2.204841e-8	3.820328e-4	1.414936e-5
28	8179861	8017810	NM_002816	PSMD12	-0.512879	2.222027e-8	3.850106e-4	1.375038e-5
29	8179861	8024655	NM_001135580	C19orf71	0.510804	2.586800e-8	4.482149e-4	1.545569e-5
30	8179861	8106702	NM_032280	ZCCHC9	-0.509826	2.778085e-8	4.813588e-4	1.604529e-5
31	8179861	7997230	NM_002811	PSMD7	-0.509486	2.847688e-8	4.934189e-4	1.591674e-5
32	8179861	8145652	NM_015344	LEPROTL1	-0.509237	2.899516e-8	5.023991e-4	1.569997e-5
33	8179861	8108861	NM_030571	NDFIP1	-0.508457	3.068399e-8	5.316615e-4	1.611095e-5
34	8179861	8005959	NM_178170	NEK8	0.506781	3.463693e-8	6.001540e-4	1.765159e-5
35	8179861	7930454	NM_145341	PDCD4	-0.506698	3.484357e-8	6.037345e-4	1.724956e-5
36	8179861	8170753	NM_014370	SRPK3	0.505936	3.680774e-8	6.377677e-4	1.771577e-5
37	8179861	8011626	NM_003342	UBE2G1	-0.505766	3.726126e-8	6.456259e-4	1.744935e-5
38	8179861	8100210	NM_003328	TXK	-0.505615	3.766678e-8	6.526524e-4	1.717506e-5
39	8179861	8031962	NM_017908	ZNF446	0.505270	3.861106e-8	6.690139e-4	1.715420e-5
40	8179861	7962085	NM_006390	IPO8	-0.504605	4.049543e-8	7.016643e-4	1.754161e-5
41	8179861	7937228	NM_001012508	SPRN	0.504281	4.144391e-8	7.180986e-4	1.751460e-5
42	8179861	8044793	NM_182915	STEAP3	0.504072	4.206957e-8	7.289395e-4	1.735570e-5
43	8179861	8172858	NM_001111125	IQSEC2	0.503444	4.399872e-8	7.623659e-4	1.772944e-5
44	8179861	8045697	NM_018151	RIF1	-0.502998	4.541742e-8	7.869476e-4	1.788517e-5
45	8179861	7972062	NM_012158	FBXL3	-0.502677	4.647001e-8	8.051859e-4	1.789302e-5
46	8179861	8046408	NM_002610	PDK1	-0.502561	4.685474e-8	8.118521e-4	1.764896e-5
47	8179861	7992302	NM_020825	CRAMP1L	0.501756	4.960965e-8	8.595863e-4	1.828907e-5
48	8179861	8075934	NM_014550	CARD10	0.500845	5.291548e-8	9.168665e-4	1.910139e-5
49	8179861	7946275	NR_003945	GVIN1	-0.500655	5.363180e-8	9.292781e-4	1.896486e-5
50	8179861	7987574	NM_133639	RHOV	0.500399	5.461127e-8	9.462494e-4	1.892499e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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