[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
2487	8125149	NM_025257	SLC44A4		solute carrier family 44, member 4
2488	8178653	NM_025257	SLC44A4		solute carrier family 44, member 4
2489	8179861	NM_025257	SLC44A4		solute carrier family 44, member 4

Fetching correlation data, please wait...
Getting list of correlations for id 2487.
Getting list of p-values for id 2487.
1 of 3 done.
Getting list of correlations for id 2488.
Getting list of p-values for id 2488.
2 of 3 done.
Getting list of correlations for id 2489.
Getting list of p-values for id 2489.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.305 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8125149	8178653	NM_025257	SLC44A4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8125149	8179861	NM_025257	SLC44A4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8179861	8125149	NM_025257	SLC44A4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8179861	8178653	NM_025257	SLC44A4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8178653	8125149	NM_025257	SLC44A4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8178653	8179861	NM_025257	SLC44A4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8125149	8112668	NM_016591	GCNT4	-0.548446	1.391172e-9	7.231449e-5	1.033064e-5
8	8179861	8112668	NM_016591	GCNT4	-0.548446	1.391172e-9	7.231449e-5	9.039311e-6
9	8178653	8112668	NM_016591	GCNT4	-0.548446	1.391172e-9	7.231449e-5	8.034943e-6
10	8179861	8048835	NM_020194	MFF	-0.540186	2.725183e-9	1.416577e-4	1.416577e-5
11	8178653	8048835	NM_020194	MFF	-0.540186	2.725183e-9	1.416577e-4	1.287797e-5
12	8125149	8048835	NM_020194	MFF	-0.540186	2.725183e-9	1.416577e-4	1.180481e-5
13	8125149	8019108	NM_014984	AZI1	0.539464	2.887796e-9	1.501105e-4	1.154696e-5
14	8178653	8019108	NM_014984	AZI1	0.539464	2.887796e-9	1.501105e-4	1.072218e-5
15	8179861	8019108	NM_014984	AZI1	0.539464	2.887796e-9	1.501105e-4	1.000737e-5
16	8179861	8097570	NM_032557	USP38	-0.536941	3.531569e-9	1.835745e-4	1.147341e-5
17	8125149	8097570	NM_032557	USP38	-0.536941	3.531569e-9	1.835745e-4	1.079850e-5
18	8178653	8097570	NM_032557	USP38	-0.536941	3.531569e-9	1.835745e-4	1.019858e-5
19	8125149	8068510	ENST00000362936		0.535829	3.857403e-9	2.005117e-4	1.055325e-5
20	8179861	8068510	ENST00000362936		0.535829	3.857403e-9	2.005117e-4	1.002558e-5
21	8178653	8068510	ENST00000362936		0.535829	3.857403e-9	2.005117e-4	9.548175e-6
22	8178653	8139244	NM_018224	C7orf44	-0.533311	4.704389e-9	2.445388e-4	1.111540e-5
23	8125149	8139244	NM_018224	C7orf44	-0.533311	4.704389e-9	2.445388e-4	1.063212e-5
24	8179861	8139244	NM_018224	C7orf44	-0.533311	4.704389e-9	2.445388e-4	1.018912e-5
25	8125149	8066985	AK299337	FAM65C	0.532031	5.200848e-9	2.703453e-4	1.081381e-5
26	8178653	8066985	AK299337	FAM65C	0.532031	5.200848e-9	2.703453e-4	1.039790e-5
27	8179861	8066985	AK299337	FAM65C	0.532031	5.200848e-9	2.703453e-4	1.001279e-5
28	8178653	7996430	NM_001040667	HSF4	0.530617	5.807439e-9	3.018765e-4	1.078130e-5
29	8179861	7996430	NM_001040667	HSF4	0.530617	5.807439e-9	3.018765e-4	1.040953e-5
30	8125149	7996430	NM_001040667	HSF4	0.530617	5.807439e-9	3.018765e-4	1.006255e-5
31	8178653	7916836	NM_001018067	SERBP1	-0.529860	6.159606e-9	3.201825e-4	1.032847e-5
32	8125149	7916836	NM_001018067	SERBP1	-0.529860	6.159606e-9	3.201825e-4	1.000570e-5
33	8179861	7916836	NM_001018067	SERBP1	-0.529860	6.159606e-9	3.201825e-4	9.702500e-6
34	8125149	7937498	NM_173584	EFCAB4A	0.529424	6.371295e-9	3.311863e-4	9.740773e-6
35	8178653	7937498	NM_173584	EFCAB4A	0.529424	6.371295e-9	3.311863e-4	9.462465e-6
36	8179861	7937498	NM_173584	EFCAB4A	0.529424	6.371295e-9	3.311863e-4	9.199619e-6
37	8179861	8150089	NM_016127	TMEM66	-0.528420	6.886347e-9	3.579592e-4	9.674574e-6
38	8125149	8150089	NM_016127	TMEM66	-0.528420	6.886347e-9	3.579592e-4	9.419980e-6
39	8178653	8150089	NM_016127	TMEM66	-0.528420	6.886347e-9	3.579592e-4	9.178442e-6
40	8178653	7932860			0.528174	7.018703e-9	3.648392e-4	9.120980e-6
41	8179861	7932860			0.528174	7.018703e-9	3.648392e-4	8.898517e-6
42	8125149	7932860			0.528174	7.018703e-9	3.648392e-4	8.686647e-6
43	8178653	8054135	NM_012214	MGAT4A	-0.526386	8.054708e-9	4.186918e-4	9.737018e-6
44	8179861	8054135	NM_012214	MGAT4A	-0.526386	8.054708e-9	4.186918e-4	9.515722e-6
45	8125149	8054135	NM_012214	MGAT4A	-0.526386	8.054708e-9	4.186918e-4	9.304262e-6
46	8178653	8113881	NM_016340	RAPGEF6	-0.525878	8.374367e-9	4.353080e-4	9.463217e-6
47	8125149	8113881	NM_016340	RAPGEF6	-0.525878	8.374367e-9	4.353080e-4	9.261872e-6
48	8179861	8113881	NM_016340	RAPGEF6	-0.525878	8.374367e-9	4.353080e-4	9.068916e-6
49	8179861	8149918	NM_000742	CHRNA2	0.522120	1.115123e-8	5.796520e-4	1.182963e-5
50	8125149	8149918	NM_000742	CHRNA2	0.522120	1.115123e-8	5.796520e-4	1.159304e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation