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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 3580.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3580 8140211 NR_003664 SPDYE8P link to infopage speedy homolog E8 (Xenopus laevis), pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 3580.
Getting list of p-values for id 3580.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.087 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8140211 8140445 NR_003664 SPDYE8P link to infopage 0.987502 1.778221e-84 3.081123e-80 3.081123e-80
2 8140211 8139996 NR_003664 SPDYE8P link to infopage 0.967274 3.626951e-63 6.284418e-59 3.142209e-59
3 8140211 8133600 NR_003664 SPDYE8P link to infopage 0.918167 3.276177e-43 5.676632e-39 1.892211e-39
4 8140211 8140009 NR_003664 SPDYE8P link to infopage 0.918167 3.276177e-43 5.676632e-39 1.419158e-39
5 8140211 8133571 NR_003664 SPDYE8P link to infopage 0.914092 3.601734e-42 6.240725e-38 1.248145e-38
6 8140211 8133590 NR_003664 SPDYE8P link to infopage 0.888772 1.116618e-36 1.934764e-32 3.224607e-33
7 8140211 8133582 NR_003664 SPDYE8P link to infopage 0.812550 6.888030e-26 1.193489e-21 1.704984e-22
8 8140211 8133209 NR_003666 SPDYE7P link to infopage 0.675746 2.613283e-15 4.528035e-11 5.660044e-12
9 8140211 7975626 NM_194278 C14orf43 link to infopage 0.654488 3.675036e-14 6.367735e-10 7.075261e-11
10 8140211 8132978 ENST00000447142 link to infopage 0.637572 2.602258e-13 4.508933e-9 4.508933e-10
11 8140211 7919578 AK125737 LOC440570 link to infopage 0.633340 4.167319e-13 7.220713e-9 6.564285e-10
12 8140211 8033319 NM_005490 SH2D3A link to infopage 0.630218 5.871873e-13 1.017419e-8 8.478495e-10
13 8140211 8140454 NM_175064 SPDYE1 link to infopage 0.629637 6.255753e-13 1.083934e-8 8.337957e-10
14 8140211 7920191 NM_178431 LCE3A link to infopage 0.621197 1.547733e-12 2.681757e-8 1.915541e-9
15 8140211 8135204 NM_001031618 SPDYE2 link to infopage 0.620721 1.627644e-12 2.820219e-8 1.880146e-9
16 8140211 8032899 NM_182919 TICAM1 link to infopage 0.619892 1.776237e-12 3.077686e-8 1.923554e-9
17 8140211 8140424 NM_175064 SPDYE1 link to infopage 0.618558 2.043319e-12 3.540459e-8 2.082623e-9
18 8140211 8049538 NM_001137550 LRRFIP1 link to infopage 0.613951 3.297459e-12 5.713508e-8 3.174171e-9
19 8140211 8118632 hsa-mir-219-1 link to infopage 0.610552 4.670554e-12 8.092668e-8 4.259299e-9
20 8140211 8069153 NM_181688 KRTAP10-10 link to infopage 0.609676 5.106038e-12 8.847233e-8 4.423616e-9
21 8140211 8067551 ENST00000415185 link to infopage 0.607398 6.428486e-12 1.113864e-7 5.304113e-9
22 8140211 7992302 NM_020825 CRAMP1L link to infopage 0.605438 7.825937e-12 1.356000e-7 6.163637e-9
23 8140211 8066498 NM_003833 MATN4 link to infopage 0.603264 9.718826e-12 1.683981e-7 7.321657e-9
24 8140211 8019437 NM_198082 CCDC57 link to infopage 0.602825 1.015050e-11 1.758778e-7 7.328242e-9
25 8140211 8037732 NM_001029861 NANOS2 link to infopage 0.599303 1.436096e-11 2.488324e-7 9.953297e-9
26 8140211 7905492 NM_178433 LCE3B link to infopage 0.596426 1.900803e-11 3.293522e-7 1.266739e-8
27 8140211 8141750 NM_001031618 SPDYE2 link to infopage 0.595218 2.136367e-11 3.701684e-7 1.370994e-8
28 8140211 8135197 NM_001031618 SPDYE2 link to infopage 0.594844 2.214929e-11 3.837808e-7 1.370646e-8
29 8140211 8007348 NM_005854 RAMP2 link to infopage 0.593862 2.434390e-11 4.218068e-7 1.454506e-8
30 8140211 8097687 NM_004575 POU4F2 link to infopage 0.593809 2.446741e-11 4.239467e-7 1.413156e-8
31 8140211 8040549 link to infopage 0.591897 2.938464e-11 5.091476e-7 1.642412e-8
32 8140211 8010379 NM_024110 CARD14 link to infopage 0.591436 3.070483e-11 5.320226e-7 1.662571e-8
33 8140211 8011220 hsa-mir-212 link to infopage 0.591201 3.140097e-11 5.440845e-7 1.648741e-8
34 8140211 7905507 NM_178428 LCE2A link to infopage 0.588562 4.032435e-11 6.986999e-7 2.055000e-8
35 8140211 7955896 NM_016057 COPZ1 link to infopage -0.588398 4.095452e-11 7.096190e-7 2.027483e-8
36 8140211 8001014 NM_173502 PRSS36 link to infopage 0.587302 4.540408e-11 7.867165e-7 2.185324e-8
37 8140211 8003193 BC093665 FAM92B link to infopage 0.585814 5.220177e-11 9.045001e-7 2.444595e-8
38 8140211 8087852 NM_017442 TLR9 link to infopage 0.585216 5.519962e-11 9.564437e-7 2.516957e-8
39 8140211 8018264 NM_030630 C17orf28 link to infopage 0.584389 5.961737e-11 1.032990e-6 2.648693e-8
40 8140211 7928645 NM_001099338 FAM22A link to infopage 0.583607 6.411229e-11 1.110874e-6 2.777184e-8
41 8140211 7960933 NM_002355 M6PR link to infopage -0.581017 8.144558e-11 1.411208e-6 3.441970e-8
42 8140211 8035040 NM_021241 WIZ link to infopage 0.580747 8.349030e-11 1.446636e-6 3.444372e-8
43 8140211 7928653 NM_001099338 FAM22A link to infopage 0.579854 9.061645e-11 1.570111e-6 3.651422e-8
44 8140211 8002245 ENST00000458872 link to infopage 0.578838 9.943997e-11 1.722996e-6 3.915901e-8
45 8140211 8019170 BC108932 C17orf55 link to infopage 0.578557 1.020286e-10 1.767849e-6 3.928554e-8
46 8140211 7994609 NM_014298 QPRT link to infopage 0.577746 1.098501e-10 1.903373e-6 4.137766e-8
47 8140211 8132531 NM_175064 SPDYE1 link to infopage 0.576699 1.208062e-10 2.093209e-6 4.453637e-8
48 8140211 7897691 NM_020780 PTCHD2 link to infopage 0.576679 1.210249e-10 2.096998e-6 4.368746e-8
49 8140211 8059244 NM_024536 CHPF link to infopage 0.576146 1.270006e-10 2.200539e-6 4.490895e-8
50 8140211 7914260 NM_002379 MATN1 link to infopage 0.575242 1.378187e-10 2.387985e-6 4.775969e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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