[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 416.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
416	7896736	ENST00000426100

Fetching correlation data, please wait...
Getting list of correlations for id 416.
Getting list of p-values for id 416.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.082 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7896736	8023933	ENST00000426100		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7896736	7977103			0.517618	1.564247e-8	2.710371e-4	1.355186e-4
3	7896736	8055139	AK056598	LOC151121	0.502148	4.824817e-8	8.359961e-4	2.786654e-4
4	7896736	8096002	ENST00000459422		0.453925	1.153908e-6	1.999376e-2	4.998440e-3
5	7896736	7997626	NM_024731	KLHL36	-0.448503	1.601002e-6	2.774057e-2	5.548114e-3
6	7896736	8012212	NM_020899	ZBTB4	-0.442048	2.347246e-6	4.067074e-2	6.778456e-3
7	7896736	7984562	NM_001003	RPLP1	-0.438628	2.865503e-6	4.965058e-2	7.092939e-3
8	7896736	7938416	ENST00000324928		0.431358	4.348318e-6	7.534330e-2	9.417912e-3
9	7896736	8071819	ENST00000428175		0.427930	5.275886e-6	9.141527e-2	1.015725e-2
10	7896736	8108376	ENST00000459407		0.422166	7.268128e-6	1.259349e-1	1.259349e-2
11	7896736	8107090			0.421263	7.638163e-6	1.323465e-1	1.203150e-2
12	7896736	7934959	hsa-mir-107		0.419020	8.635856e-6	1.496335e-1	1.246946e-2
13	7896736	8131942	ENST00000365363		0.416135	1.009945e-5	1.749931e-1	1.346101e-2
14	7896736	8038343	AK097351		0.416104	1.011619e-5	1.752833e-1	1.252023e-2
15	7896736	8075705			0.413540	1.161218e-5	2.012043e-1	1.341362e-2
16	7896736	8070081	ENST00000384370		0.413451	1.166773e-5	2.021668e-1	1.263543e-2
17	7896736	7940835	NM_004074	COX8A	-0.412557	1.223935e-5	2.120712e-1	1.247478e-2
18	7896736	7912224	NM_003039	SLC2A5	0.411194	1.316132e-5	2.280462e-1	1.266923e-2
19	7896736	8166211	ENST00000400004		0.410295	1.380512e-5	2.392013e-1	1.258954e-2
20	7896736	7994265	ENST00000363059		-0.408017	1.557078e-5	2.697949e-1	1.348974e-2
21	7896736	8002939	ENST00000362429		0.402442	2.082656e-5	3.608618e-1	1.718389e-2
22	7896736	7944867	NM_170601	SIAE	-0.400998	2.243722e-5	3.887698e-1	1.767135e-2
23	7896736	8178470	NM_002701	POU5F1	0.400508	2.300994e-5	3.986932e-1	1.733449e-2
24	7896736	7902472			0.399361	2.440528e-5	4.228704e-1	1.761960e-2
25	7896736	8053158	NM_006302	MOGS	-0.398067	2.607275e-5	4.517625e-1	1.807050e-2
26	7896736	7946211	NM_015324	RRP8	-0.397376	2.700724e-5	4.679544e-1	1.799825e-2
27	7896736	8097936			0.396398	2.838194e-5	4.917739e-1	1.821385e-2
28	7896736	7924760	NM_002221	ITPKB	-0.396154	2.873601e-5	4.979088e-1	1.778246e-2
29	7896736	8069811	NM_181624	KRTAP23-1	0.394857	3.068360e-5	5.316547e-1	1.833292e-2
30	7896736	7938263	NM_003754	EIF3F	-0.394440	3.133625e-5	5.429632e-1	1.809877e-2
31	7896736	7916384	NM_201546	CDCP2	0.392006	3.540731e-5	6.135024e-1	1.979040e-2
32	7896736	7979741	ENST00000362568		0.391457	3.639326e-5	6.305860e-1	1.970581e-2
33	7896736	8065120	AF258585		0.389611	3.989330e-5	6.912312e-1	2.094640e-2
34	7896736	8028102			0.389098	4.092205e-5	7.090564e-1	2.085460e-2
35	7896736	7944527	ENST00000319763		0.385160	4.967628e-5	8.607409e-1	2.459260e-2
36	7896736	8071737	NM_002415	MIF	-0.384966	5.014885e-5	8.689292e-1	2.413692e-2
37	7896736	7956076	NM_001798	CDK2	-0.384303	5.179963e-5	8.975321e-1	2.425763e-2
38	7896736	7997245			0.384128	5.224133e-5	9.051856e-1	2.382067e-2
39	7896736	8118932	NM_022047	DEF6	-0.383907	5.280742e-5	9.149942e-1	2.346139e-2
40	7896736	7897286	AY358179	LOC100130071	0.383122	5.486428e-5	9.506333e-1	2.376583e-2
41	7896736	8083457	NM_002886	RAP2B	-0.382841	5.561897e-5	9.637100e-1	2.350512e-2
42	7896736	8019347	BC008091		0.380741	6.156420e-5	1.066723e+0	2.539817e-2
43	7896736	7901601	NM_016491	MRPL37	-0.380390	6.261587e-5	1.084945e+0	2.523128e-2
44	7896736	8002590	ENST00000384740		0.379664	6.483993e-5	1.123481e+0	2.553367e-2
45	7896736	8033899	NM_003755	EIF3G	-0.379402	6.566062e-5	1.137702e+0	2.528226e-2
46	7896736	8073296	NM_005297	MCHR1	0.378501	6.856052e-5	1.187948e+0	2.582496e-2
47	7896736	8042059	NR_027258	PRDXDD1P	0.378474	6.864962e-5	1.189492e+0	2.530834e-2
48	7896736	8104693	NM_178140	PDZD2	0.378430	6.879346e-5	1.191984e+0	2.483301e-2
49	7896736	7945645	NM_001005922	KRTAP5-1	0.378259	6.935708e-5	1.201750e+0	2.452551e-2
50	7896736	8002051	NM_001138	AGRP	0.377762	7.102748e-5	1.230693e+0	2.461386e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation