[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
2744	8124889	NM_002701	POU5F1		POU class 5 homeobox 1
2745	8179719	NM_002701	POU5F1		POU class 5 homeobox 1
5213	8178470	NM_002701	POU5F1		POU class 5 homeobox 1

Fetching correlation data, please wait...
Getting list of correlations for id 2744.
Getting list of p-values for id 2744.
1 of 3 done.
Getting list of correlations for id 2745.
Getting list of p-values for id 2745.
2 of 3 done.
Getting list of correlations for id 5213.
Getting list of p-values for id 5213.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.306 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179719	8124889	NM_002701	POU5F1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8124889	8179719	NM_002701	POU5F1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8178470	8124889	NM_002701	POU5F1	0.924862	4.797901e-45	2.493997e-40	8.313322e-41
4	8124889	8178470	NM_002701	POU5F1	0.924862	4.797901e-45	2.493997e-40	6.234992e-41
5	8178470	8179719	NM_002701	POU5F1	0.924862	4.797901e-45	2.493997e-40	4.987993e-41
6	8179719	8178470	NM_002701	POU5F1	0.924862	4.797901e-45	2.493997e-40	4.156661e-41
7	8179719	7989985	NM_001004439	ITGA11	0.699102	1.098007e-16	5.707552e-12	8.153646e-13
8	8124889	7989985	NM_001004439	ITGA11	0.699102	1.098007e-16	5.707552e-12	7.134441e-13
9	8179719	8137781	ENST00000443349		0.689209	4.359765e-16	2.266249e-11	2.518055e-12
10	8124889	8137781	ENST00000443349		0.689209	4.359765e-16	2.266249e-11	2.266249e-12
11	8124889	7956120	NM_001982	ERBB3	0.687930	5.189833e-16	2.697727e-11	2.452479e-12
12	8179719	7956120	NM_001982	ERBB3	0.687930	5.189833e-16	2.697727e-11	2.248106e-12
13	8179719	7914260	NM_002379	MATN1	0.686329	6.447066e-16	3.351249e-11	2.577884e-12
14	8124889	7914260	NM_002379	MATN1	0.686329	6.447066e-16	3.351249e-11	2.393750e-12
15	8179719	8096556	NM_015143	METAP1	-0.683982	8.838150e-16	4.594159e-11	3.062773e-12
16	8124889	8096556	NM_015143	METAP1	-0.683982	8.838150e-16	4.594159e-11	2.871349e-12
17	8124889	7942717	NM_000260	MYO7A	0.683665	9.220828e-16	4.793078e-11	2.819458e-12
18	8179719	7942717	NM_000260	MYO7A	0.683665	9.220828e-16	4.793078e-11	2.662821e-12
19	8179719	8019585	NM_030966	KRTAP1-3	0.683118	9.919868e-16	5.156447e-11	2.713919e-12
20	8179719	8015189	NM_030966	KRTAP1-3	0.683118	9.919868e-16	5.156447e-11	2.578223e-12
21	8124889	8019585	NM_030966	KRTAP1-3	0.683118	9.919868e-16	5.156447e-11	2.455451e-12
22	8124889	8015189	NM_030966	KRTAP1-3	0.683118	9.919868e-16	5.156447e-11	2.343839e-12
23	8124889	8062064	NM_020884	MYH7B	0.682996	1.008225e-15	5.240856e-11	2.278633e-12
24	8179719	8062064	NM_020884	MYH7B	0.682996	1.008225e-15	5.240856e-11	2.183690e-12
25	8178470	8015189	NM_030966	KRTAP1-3	0.682805	1.034170e-15	5.375719e-11	2.150288e-12
26	8178470	8019585	NM_030966	KRTAP1-3	0.682805	1.034170e-15	5.375719e-11	2.067584e-12
27	8124889	8068496	NM_009586	SIM2	0.677455	2.092827e-15	1.087872e-10	4.029156e-12
28	8179719	8068496	NM_009586	SIM2	0.677455	2.092827e-15	1.087872e-10	3.885258e-12
29	8124889	8059028	NM_194302	CCDC108	0.675852	2.577864e-15	1.340000e-10	4.620688e-12
30	8179719	8059028	NM_194302	CCDC108	0.675852	2.577864e-15	1.340000e-10	4.466665e-12
31	8124889	8067610	NM_000744	CHRNA4	0.674906	2.913214e-15	1.514318e-10	4.884897e-12
32	8179719	8067610	NM_000744	CHRNA4	0.674906	2.913214e-15	1.514318e-10	4.732244e-12
33	8179719	7913450	NM_005529	HSPG2	0.674622	3.021938e-15	1.570834e-10	4.760103e-12
34	8124889	7913450	NM_005529	HSPG2	0.674622	3.021938e-15	1.570834e-10	4.620100e-12
35	8179719	7960933	NM_002355	M6PR	-0.672382	4.028818e-15	2.094220e-10	5.983486e-12
36	8124889	7960933	NM_002355	M6PR	-0.672382	4.028818e-15	2.094220e-10	5.817278e-12
37	8124889	8032829	NM_001080400	PLIN4	0.670651	5.023025e-15	2.611019e-10	7.056808e-12
38	8179719	8032829	NM_001080400	PLIN4	0.670651	5.023025e-15	2.611019e-10	6.871102e-12
39	8179719	8092501	NM_000460	THPO	0.669844	5.564095e-15	2.892272e-10	7.416083e-12
40	8124889	8092501	NM_000460	THPO	0.669844	5.564095e-15	2.892272e-10	7.230681e-12
41	8179719	8116253	NM_000843	GRM6	0.669386	5.896229e-15	3.064919e-10	7.475412e-12
42	8124889	8116253	NM_000843	GRM6	0.669386	5.896229e-15	3.064919e-10	7.297426e-12
43	8179719	8014269	NM_139285	GAS2L2	0.668546	6.555231e-15	3.407474e-10	7.924359e-12
44	8124889	8014269	NM_139285	GAS2L2	0.668546	6.555231e-15	3.407474e-10	7.744260e-12
45	8124889	7938669	NM_014267	C11orf58	-0.668273	6.784578e-15	3.526691e-10	7.837092e-12
46	8179719	7938669	NM_014267	C11orf58	-0.668273	6.784578e-15	3.526691e-10	7.666720e-12
47	8179719	7945688	NR_003512	INS-IGF2	0.661868	1.503820e-14	7.817006e-10	1.663193e-11
48	8124889	7945688	NR_003512	INS-IGF2	0.661868	1.503820e-14	7.817006e-10	1.628543e-11
49	8124889	7936762	NM_001001976	ATE1	-0.661645	1.545591e-14	8.034136e-10	1.639620e-11
50	8179719	7936762	NM_001001976	ATE1	-0.661645	1.545591e-14	8.034136e-10	1.606827e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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