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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
4244 8068496 NM_009586 SIM2 link to infopage single-minded homolog 2 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 4244.
Getting list of p-values for id 4244.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8068496 7913450 NM_005529 HSPG2 link to infopage 0.834604 1.984401e-28 3.438372e-24 3.438372e-24
2 8068496 7987701 NM_016642 SPTBN5 link to infopage 0.827880 1.289091e-27 2.233607e-23 1.116804e-23
3 8068496 8159734 NM_000718 CACNA1B link to infopage 0.815522 3.278655e-26 5.680926e-22 1.893642e-22
4 8068496 7986960 NM_015307 FAM189A1 link to infopage 0.809046 1.625051e-25 2.815725e-21 7.039313e-22
5 8068496 8042335 NM_003375 VDAC2 link to infopage -0.803971 5.461477e-25 9.463101e-21 1.892620e-21
6 8068496 8121209 NM_005604 POU3F2 link to infopage 0.800764 1.153943e-24 1.999437e-20 3.332394e-21
7 8068496 8072436 NM_001002837 INPP5J link to infopage 0.800567 1.207513e-24 2.092258e-20 2.988940e-21
8 8068496 8170716 NM_005393 PLXNB3 link to infopage 0.800330 1.275326e-24 2.209757e-20 2.762197e-21
9 8068496 7997801 NM_013278 IL17C link to infopage 0.800049 1.360841e-24 2.357930e-20 2.619922e-21
10 8068496 7901696 NM_174936 PCSK9 link to infopage 0.799501 1.543364e-24 2.674186e-20 2.674186e-21
11 8068496 7936762 NM_001001976 ATE1 link to infopage -0.796923 2.776657e-24 4.811113e-20 4.373739e-21
12 8068496 8110821 NM_001044 SLC6A3 link to infopage 0.794724 4.551815e-24 7.886929e-20 6.572441e-21
13 8068496 8005328 NM_016239 MYO15A link to infopage 0.794146 5.178491e-24 8.972772e-20 6.902132e-21
14 8068496 8117849 NM_033229 TRIM15 link to infopage 0.794102 5.229327e-24 9.060854e-20 6.472039e-21
15 8068496 8177760 NM_033229 TRIM15 link to infopage 0.794102 5.229327e-24 9.060854e-20 6.040570e-21
16 8068496 8179070 NM_033229 TRIM15 link to infopage 0.794102 5.229327e-24 9.060854e-20 5.663034e-21
17 8068496 8107897 NM_003687 PDLIM4 link to infopage 0.791737 8.822260e-24 1.528633e-19 8.991959e-21
18 8068496 7955184 NM_006262 PRPH link to infopage 0.786930 2.502861e-23 4.336708e-19 2.409282e-20
19 8068496 7937560 NM_002457 MUC2 link to infopage 0.786614 2.677903e-23 4.640002e-19 2.442106e-20
20 8068496 8159036 NM_139025 ADAMTS13 link to infopage 0.785962 3.078119e-23 5.333456e-19 2.666728e-20
21 8068496 8024768 NM_133475 ANKRD24 link to infopage 0.785561 3.351973e-23 5.807963e-19 2.765697e-20
22 8068496 8008228 NM_138281 DLX4 link to infopage 0.784542 4.159717e-23 7.207542e-19 3.276155e-20
23 8068496 8032699 NM_015174 ZFR2 link to infopage 0.782784 6.022518e-23 1.043522e-18 4.537051e-20
24 8068496 8049942 NM_080741 NEU4 link to infopage 0.782086 6.968992e-23 1.207517e-18 5.031322e-20
25 8068496 8070933 NM_006657 FTCD link to infopage 0.781984 7.118696e-23 1.233456e-18 4.933826e-20
26 8068496 8137336 NM_004769 ACCN3 link to infopage 0.781397 8.043835e-23 1.393755e-18 5.360598e-20
27 8068496 8028407 NM_000540 RYR1 link to infopage 0.780691 9.312470e-23 1.613572e-18 5.976191e-20
28 8068496 7998414 ENST00000428636 link to infopage 0.780180 1.035231e-22 1.793745e-18 6.406232e-20
29 8068496 8049934 NM_022134 GAL3ST2 link to infopage 0.779991 1.076247e-22 1.864814e-18 6.430393e-20
30 8068496 8067270 NM_153360 APCDD1L link to infopage 0.779552 1.178346e-22 2.041720e-18 6.805732e-20
31 8068496 8101000 ENST00000437185 link to infopage 0.779005 1.318605e-22 2.284747e-18 7.370152e-20
32 8068496 7991893 BC016613 C16orf11 link to infopage 0.778635 1.422547e-22 2.464847e-18 7.702647e-20
33 8068496 7927383 NM_153034 ZNF488 link to infopage 0.778423 1.485672e-22 2.574224e-18 7.800679e-20
34 8068496 7945688 NR_003512 INS-IGF2 link to infopage 0.778173 1.563589e-22 2.709230e-18 7.968325e-20
35 8068496 7952893 BC024764 IQSEC3 link to infopage 0.778004 1.618685e-22 2.804695e-18 8.013414e-20
36 8068496 8159670 NM_006647 NOXA1 link to infopage 0.776315 2.282222e-22 3.954406e-18 1.098446e-19
37 8068496 8046922 NM_000090 COL3A1 link to infopage 0.775677 2.596152e-22 4.498352e-18 1.215771e-19
38 8068496 8036883 NM_144685 HIPK4 link to infopage 0.775382 2.755496e-22 4.774447e-18 1.256433e-19
39 8068496 8131056 NM_017781 CYP2W1 link to infopage 0.775379 2.757254e-22 4.777493e-18 1.224998e-19
40 8068496 7952290 NM_012101 TRIM29 link to infopage 0.775268 2.819370e-22 4.885122e-18 1.221280e-19
41 8068496 8025053 NM_003811 TNFSF9 link to infopage 0.775230 2.841275e-22 4.923077e-18 1.200751e-19
42 8068496 8067409 NM_005560 LAMA5 link to infopage 0.775182 2.868825e-22 4.970812e-18 1.183527e-19
43 8068496 8153101 NM_152888 COL22A1 link to infopage 0.774609 3.218634e-22 5.576926e-18 1.296960e-19
44 8068496 8116582 NM_001452 FOXF2 link to infopage 0.774564 3.247987e-22 5.627786e-18 1.279042e-19
45 8068496 7955305 NM_001652 AQP6 link to infopage 0.774006 3.632188e-22 6.293491e-18 1.398554e-19
46 8068496 7927367 NM_001040084 ANXA8 link to infopage 0.773635 3.912117e-22 6.778525e-18 1.473592e-19
47 8068496 7955231 NM_012284 KCNH3 link to infopage 0.773175 4.287551e-22 7.429039e-18 1.580647e-19
48 8068496 8087907 NM_020163 SEMA3G link to infopage 0.772795 4.624560e-22 8.012974e-18 1.669370e-19
49 8068496 8032312 NM_138813 ATP8B3 link to infopage 0.772769 4.649038e-22 8.055388e-18 1.643957e-19
50 8068496 8006679 ENST00000411344 link to infopage 0.772311 5.091176e-22 8.821480e-18 1.764296e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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