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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 6865.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6865 8117849 NM_033229 TRIM15 link to infopage tripartite motif-containing 15

Fetching correlation data, please wait...
Getting list of correlations for id 6865.
Getting list of p-values for id 6865.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8117849 8177760 NM_033229 TRIM15 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8117849 8179070 NM_033229 TRIM15 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8117849 8004842 NM_173728 ARHGEF15 link to infopage 0.823313 4.389042e-27 7.604893e-23 2.534964e-23
4 8117849 7913450 NM_005529 HSPG2 link to infopage 0.820882 8.304895e-27 1.438989e-22 3.597473e-23
5 8117849 8114550 NM_004883 NRG2 link to infopage 0.817026 2.240435e-26 3.882002e-22 7.764003e-23
6 8117849 8157804 NM_182487 OLFML2A link to infopage 0.816510 2.554186e-26 4.425639e-22 7.376064e-23
7 8117849 8010583 NR_027255 LOC388428 link to infopage 0.816437 2.601945e-26 4.508391e-22 6.440558e-23
8 8117849 8049942 NM_080741 NEU4 link to infopage 0.813586 5.325472e-26 9.227445e-22 1.153431e-22
9 8117849 7996027 NM_002996 CX3CL1 link to infopage 0.811213 9.577507e-26 1.659495e-21 1.843883e-22
10 8117849 7936762 NM_001001976 ATE1 link to infopage -0.810830 1.052069e-25 1.822920e-21 1.822920e-22
11 8117849 8028407 NM_000540 RYR1 link to infopage 0.809930 1.310624e-25 2.270919e-21 2.064472e-22
12 8117849 8036270 NM_152658 THAP8 link to infopage 0.803975 5.456067e-25 9.453728e-21 7.878106e-22
13 8117849 8113981 NM_004199 P4HA2 link to infopage 0.803509 6.088029e-25 1.054873e-20 8.114406e-22
14 8117849 8034469 NM_032301 FBXW9 link to infopage 0.802791 7.203334e-25 1.248122e-20 8.915155e-22
15 8117849 7987701 NM_016642 SPTBN5 link to infopage 0.802665 7.417959e-25 1.285310e-20 8.568732e-22
16 8117849 7992845 NM_003456 ZNF205 link to infopage 0.801933 8.798429e-25 1.524504e-20 9.528149e-22
17 8117849 8131056 NM_017781 CYP2W1 link to infopage 0.801607 9.491227e-25 1.644545e-20 9.673793e-22
18 8117849 8038280 NM_000737 CGB link to infopage 0.801313 1.016114e-24 1.760621e-20 9.781226e-22
19 8117849 8038299 NM_033142 CGB7 link to infopage 0.799975 1.383978e-24 2.398018e-20 1.262115e-21
20 8117849 8037732 NM_001029861 NANOS2 link to infopage 0.799551 1.525645e-24 2.643486e-20 1.321743e-21
21 8117849 8111216 ENST00000426411 link to infopage 0.799340 1.601534e-24 2.774978e-20 1.321418e-21
22 8117849 7997801 NM_013278 IL17C link to infopage 0.798993 1.733649e-24 3.003893e-20 1.365406e-21
23 8117849 8013465 NM_005557 KRT16 link to infopage 0.798484 1.947685e-24 3.374754e-20 1.467285e-21
24 8117849 8121209 NM_005604 POU3F2 link to infopage 0.797078 2.680543e-24 4.644577e-20 1.935240e-21
25 8117849 7953150 NM_003213 TEAD4 link to infopage 0.794690 4.585961e-24 7.946094e-20 3.178438e-21
26 8117849 8068496 NM_009586 SIM2 link to infopage 0.794102 5.229327e-24 9.060854e-20 3.484944e-21
27 8117849 7998015 NM_032451 SPIRE2 link to infopage 0.792187 7.991516e-24 1.384690e-19 5.128481e-21
28 8117849 8024306 NM_005883 APC2 link to infopage 0.791407 9.484828e-24 1.643436e-19 5.869415e-21
29 8117849 8125383 NM_004557 NOTCH4 link to infopage 0.790013 1.286455e-23 2.229040e-19 7.686345e-21
30 8117849 7958577 NM_032829 C12orf34 link to infopage 0.789362 1.481777e-23 2.567475e-19 8.558251e-21
31 8117849 7952893 BC024764 IQSEC3 link to infopage 0.789169 1.545131e-23 2.677248e-19 8.636285e-21
32 8117849 8038292 NM_033043 CGB5 link to infopage 0.788457 1.802617e-23 3.123394e-19 9.760605e-21
33 8117849 8088425 NM_138805 FAM3D link to infopage 0.787507 2.211505e-23 3.831875e-19 1.161174e-20
34 8117849 8110821 NM_001044 SLC6A3 link to infopage 0.787166 2.379701e-23 4.123308e-19 1.212738e-20
35 8117849 8125568 NM_080680 COL11A2 link to infopage 0.786685 2.637558e-23 4.570097e-19 1.305742e-20
36 8117849 8049137 NM_001631 ALPI link to infopage 0.786477 2.757374e-23 4.777702e-19 1.327140e-20
37 8117849 7945688 NR_003512 INS-IGF2 link to infopage 0.786299 2.864136e-23 4.962689e-19 1.341267e-20
38 8117849 8030181 NM_033378 CGB2 link to infopage 0.785504 3.392472e-23 5.878135e-19 1.546878e-20
39 8117849 8067820 BC024764 IQSEC3 link to infopage 0.785306 3.538166e-23 6.130579e-19 1.571943e-20
40 8117849 8115691 NM_003062 SLIT3 link to infopage 0.784846 3.901207e-23 6.759622e-19 1.689905e-20
41 8117849 7937560 NM_002457 MUC2 link to infopage 0.784768 3.965896e-23 6.871708e-19 1.676026e-20
42 8117849 8018522 NM_001080542 FBF1 link to infopage 0.784364 4.320002e-23 7.485267e-19 1.782206e-20
43 8117849 8042335 NM_003375 VDAC2 link to infopage -0.782188 6.821864e-23 1.182024e-18 2.748894e-20
44 8117849 8153346 NM_023946 LYNX1 link to infopage 0.781853 7.315109e-23 1.267489e-18 2.880657e-20
45 8117849 8051024 NM_178553 C2orf53 link to infopage 0.781682 7.581342e-23 1.313619e-18 2.919153e-20
46 8117849 8137330 ENST00000356058 link to infopage 0.780707 9.283237e-23 1.608507e-18 3.496753e-20
47 8117849 7906307 NM_018240 KIRREL link to infopage 0.780690 9.314921e-23 1.613996e-18 3.434035e-20
48 8117849 8029458 NM_001039213 CEACAM16 link to infopage 0.780616 9.459829e-23 1.639105e-18 3.414801e-20
49 8117849 8072436 NM_001002837 INPP5J link to infopage 0.780589 9.512265e-23 1.648190e-18 3.363653e-20
50 8117849 8032051 NM_182577 ODF3L2 link to infopage 0.780161 1.039143e-22 1.800522e-18 3.601044e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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