[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 5536.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5536	8060274	NM_015963	THAP4		THAP domain containing 4

Fetching correlation data, please wait...
Getting list of correlations for id 5536.
Getting list of p-values for id 5536.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8060274	8077250	NM_015963	THAP4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8060274	7992552	NM_022372	MLST8	0.594861	2.211285e-11	3.831494e-7	1.915747e-7
3	8060274	8158224	NM_005094	SLC27A4	0.586717	4.796729e-11	8.311293e-7	2.770431e-7
4	8060274	8137847	BC015632	C7orf27	0.574719	1.444630e-10	2.503111e-6	6.257777e-7
5	8060274	8134834	NM_006076	AGFG2	0.574154	1.519905e-10	2.633540e-6	5.267080e-7
6	8060274	7953547	NM_001007026	ATN1	0.573490	1.613346e-10	2.795445e-6	4.659075e-7
7	8060274	7964499	NM_001122772	AGAP2	0.573105	1.670007e-10	2.893621e-6	4.133744e-7
8	8060274	8148824	NM_005526	HSF1	0.565419	3.294734e-10	5.708786e-6	7.135983e-7
9	8060274	7903321	NM_001130841	RTCD1	-0.559434	5.526319e-10	9.575452e-6	1.063939e-6
10	8060274	8081256	NM_018309	TBC1D23	-0.558127	6.178309e-10	1.070516e-5	1.070516e-6
11	8060274	8164862	NM_006753	SURF6	0.557279	6.640559e-10	1.150610e-5	1.046009e-6
12	8060274	7923824	NM_173854	SLC41A1	0.554916	8.110370e-10	1.405284e-5	1.171070e-6
13	8060274	8071516	NM_004327	BCR	0.554722	8.244295e-10	1.428489e-5	1.098838e-6
14	8060274	8030403	NM_020719	PRR12	0.553589	9.068670e-10	1.571329e-5	1.122378e-6
15	8060274	7903541	NM_007269	STXBP3	-0.551852	1.048716e-9	1.817110e-5	1.211407e-6
16	8060274	7917120	NM_015017	USP33	-0.551428	1.086466e-9	1.882519e-5	1.176574e-6
17	8060274	7955845	NM_017410	HOXC13	0.550066	1.216683e-9	2.108146e-5	1.240086e-6
18	8060274	8153625	NM_017570	OPLAH	0.549589	1.265738e-9	2.193143e-5	1.218413e-6
19	8060274	7949383	NM_032431	SYVN1	0.549020	1.326787e-9	2.298923e-5	1.209960e-6
20	8060274	7963265	NR_026893	POU6F1	0.547912	1.453797e-9	2.518994e-5	1.259497e-6
21	8060274	8011188	ENST00000330676		0.543256	2.127187e-9	3.685777e-5	1.755132e-6
22	8060274	8150714	NM_052937	PCMTD1	-0.542343	2.290415e-9	3.968601e-5	1.803910e-6
23	8060274	8062123	NM_006690	MMP24	0.541444	2.462806e-9	4.267303e-5	1.855349e-6
24	8060274	8178699	NM_005510	DOM3Z	0.539580	2.861084e-9	4.957400e-5	2.065583e-6
25	8060274	8125220	NM_005510	DOM3Z	0.539580	2.861084e-9	4.957400e-5	1.982960e-6
26	8060274	8088718	NM_003968	UBA3	-0.537329	3.424356e-9	5.933382e-5	2.282070e-6
27	8060274	8149986	NM_018660	ZNF395	0.535993	3.807524e-9	6.597297e-5	2.443443e-6
28	8060274	8028872	NM_001042544	LTBP4	0.533591	4.602018e-9	7.973917e-5	2.847828e-6
29	8060274	8129317	NM_020755	SERINC1	-0.532661	4.950428e-9	8.577607e-5	2.957796e-6
30	8060274	7927926	NM_024045	DDX50	-0.532540	4.997506e-9	8.659178e-5	2.886393e-6
31	8060274	8105633	NM_015342	PPWD1	-0.532024	5.203729e-9	9.016501e-5	2.908549e-6
32	8060274	7944418	NM_014807	C2CD2L	0.531302	5.505391e-9	9.539192e-5	2.980997e-6
33	8060274	7897068	NM_003036	SKI	0.531239	5.532546e-9	9.586242e-5	2.904922e-6
34	8060274	8179926	NM_005510	DOM3Z	0.530692	5.773546e-9	1.000382e-4	2.942301e-6
35	8060274	8034754	NM_138352	SAMD1	0.529152	6.507011e-9	1.127470e-4	3.221342e-6
36	8060274	7954388	NM_016072	GOLT1B	-0.528209	6.999642e-9	1.212828e-4	3.368967e-6
37	8060274	8055672	NM_015702	MMADHC	-0.527690	7.285570e-9	1.262371e-4	3.411813e-6
38	8060274	7924910	NM_001100	ACTA1	0.527481	7.403814e-9	1.282859e-4	3.375944e-6
39	8060274	8114245	NM_006161	NEUROG1	0.526999	7.683789e-9	1.331370e-4	3.413770e-6
40	8060274	8049961	NM_183421	FBXO25	-0.526058	8.259583e-9	1.431138e-4	3.577845e-6
41	8060274	7975113	NM_145165	CHURC1	-0.525893	8.365010e-9	1.449405e-4	3.535135e-6
42	8060274	8071339	NM_013373	ZDHHC8	0.525776	8.440441e-9	1.462475e-4	3.482084e-6
43	8060274	8011293	NM_015229	KIAA0664	0.524076	9.611581e-9	1.665399e-4	3.873020e-6
44	8060274	8113591	NM_005023	PGGT1B	-0.523160	1.030538e-8	1.785613e-4	4.058212e-6
45	8060274	7994637	NM_001042539	MAZ	0.522834	1.056338e-8	1.830317e-4	4.067370e-6
46	8060274	8000757	NM_003586	DOC2A	0.521946	1.129858e-8	1.957704e-4	4.255879e-6
47	8060274	8067017	NM_003859	DPM1	-0.521486	1.169853e-8	2.027003e-4	4.312773e-6
48	8060274	8167006	NM_006915	RP2	-0.519622	1.346292e-8	2.332721e-4	4.859834e-6
49	8060274	8152477	NM_006265	RAD21	-0.518635	1.449773e-8	2.512021e-4	5.126574e-6
50	8060274	8152863	ENST00000363205		-0.518553	1.458616e-8	2.527344e-4	5.054688e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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