[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 559.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
559	8055236	NR_027313	LOC150527		hypothetical LOC150527

Fetching correlation data, please wait...
Getting list of correlations for id 559.
Getting list of p-values for id 559.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.078 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8055236	8045205	NR_027313	LOC150527	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8055236	8098167	BC022381	C4orf39	0.511050	2.540740e-8	4.402341e-4	2.201170e-4
3	8055236	8126035	NM_020939	CPNE5	0.484379	1.645436e-7	2.851047e-3	9.503489e-4
4	8055236	8040278	NM_152391	PQLC3	-0.477897	2.530734e-7	4.385003e-3	1.096251e-3
5	8055236	7956395	NM_007224	NXPH4	0.463927	6.213205e-7	1.076562e-2	2.153124e-3
6	8055236	8104074	NM_005958	MTNR1A	0.461683	7.151596e-7	1.239157e-2	2.065262e-3
7	8055236	8118981	BC033033	C6orf81	0.459832	8.024740e-7	1.390447e-2	1.986353e-3
8	8055236	8035408	NM_000923	PDE4C	0.459302	8.292953e-7	1.436920e-2	1.796150e-3
9	8055236	8026861	NM_014256	B3GNT3	0.456766	9.698155e-7	1.680399e-2	1.867110e-3
10	8055236	8089062	NM_019895	CLDND1	-0.456106	1.009904e-6	1.749861e-2	1.749861e-3
11	8055236	8141648	NM_015831	ACHE	0.452123	1.287412e-6	2.230699e-2	2.027908e-3
12	8055236	8166569	ENST00000420318		0.449404	1.516783e-6	2.628129e-2	2.190108e-3
13	8055236	8043745	ENST00000429765		0.448426	1.608399e-6	2.786873e-2	2.143748e-3
14	8055236	7934141	NM_022146	NPFFR1	0.448108	1.639284e-6	2.840388e-2	2.028849e-3
15	8055236	8029856	NM_004491	GRLF1	-0.447021	1.749254e-6	3.030932e-2	2.020622e-3
16	8055236	8092845	NM_004488	GP5	0.446754	1.777265e-6	3.079467e-2	1.924667e-3
17	8055236	8035069	NM_052890	PGLYRP2	0.446258	1.830537e-6	3.171772e-2	1.865748e-3
18	8055236	7973580	NM_203402	FITM1	0.445413	1.924711e-6	3.334946e-2	1.852748e-3
19	8055236	7986838	NM_000275	OCA2	0.444893	1.984918e-6	3.439268e-2	1.810141e-3
20	8055236	7952339	NR_001453	SNORD14C	-0.444371	2.047187e-6	3.547160e-2	1.773580e-3
21	8055236	8153269	NM_005293	GPR20	0.443387	2.169508e-6	3.759106e-2	1.790051e-3
22	8055236	7984588	NM_024817	THSD4	0.443372	2.171472e-6	3.762509e-2	1.710231e-3
23	8055236	8137931	NM_001100600	MMD2	0.443004	2.218983e-6	3.844832e-2	1.671666e-3
24	8055236	8013833	NM_178860	SEZ6	0.441766	2.386363e-6	4.134851e-2	1.722855e-3
25	8055236	7928823	NM_001030015	OPN4	0.441154	2.473348e-6	4.285570e-2	1.714228e-3
26	8055236	7960716	NM_001144831	PHB2	-0.440194	2.616109e-6	4.532931e-2	1.743435e-3
27	8055236	8071861	NM_019601	SUSD2	0.439921	2.657982e-6	4.605485e-2	1.705735e-3
28	8055236	8061529	NM_014012	REM1	0.438539	2.880400e-6	4.990869e-2	1.782453e-3
29	8055236	7914580	NM_153756	FNDC5	0.438084	2.957312e-6	5.124134e-2	1.766943e-3
30	8055236	7931348	NM_207426	FOXI2	0.434853	3.562669e-6	6.173037e-2	2.057679e-3
31	8055236	8014282	NM_024302	MMP28	0.434236	3.690791e-6	6.395033e-2	2.062914e-3
32	8055236	8051668	ENST00000423361		0.434022	3.736308e-6	6.473901e-2	2.023094e-3
33	8055236	7905324	BC002469	C1orf56	0.433916	3.758972e-6	6.513170e-2	1.973688e-3
34	8055236	8158708	NM_021619	PRDM12	0.433158	3.925367e-6	6.801483e-2	2.000436e-3
35	8055236	8012126	NM_001307	CLDN7	0.431826	4.234372e-6	7.336896e-2	2.096256e-3
36	8055236	8151644	NM_016033	FAM82B	-0.430633	4.530784e-6	7.850490e-2	2.180692e-3
37	8055236	8027574	NM_022467	CHST8	0.428245	5.183465e-6	8.981389e-2	2.427402e-3
38	8055236	8019699	NM_033059	KRTAP4-11	0.427068	5.536786e-6	9.593590e-2	2.524629e-3
39	8055236	7999634	NM_006985	NPIP	-0.426928	5.580532e-6	9.669387e-2	2.479330e-3
40	8055236	8076002	NM_013356	SLC16A8	0.425978	5.884502e-6	1.019608e-1	2.549019e-3
41	8055236	8037103	NM_002088	GRIK5	0.425761	5.955801e-6	1.031962e-1	2.516980e-3
42	8055236	7949227	NM_017525	CDC42BPG	0.425393	6.079237e-6	1.053349e-1	2.507975e-3
43	8055236	8073939	AK126356	FLJ44385	0.425375	6.085333e-6	1.054406e-1	2.452106e-3
44	8055236	7903632	NM_001408	CELSR2	0.424321	6.452290e-6	1.117988e-1	2.540882e-3
45	8055236	7997801	NM_013278	IL17C	0.424217	6.489448e-6	1.124427e-1	2.498726e-3
46	8055236	7999886	BC020735		0.424158	6.510874e-6	1.128139e-1	2.452476e-3
47	8055236	8156278	NM_005226	S1PR3	0.423671	6.688764e-6	1.158962e-1	2.465877e-3
48	8055236	8171350	NM_152634	TCEANC	0.423667	6.690090e-6	1.159192e-1	2.414983e-3
49	8055236	8037767	NM_018215	PNMAL1	0.423498	6.752983e-6	1.170089e-1	2.387938e-3
50	8055236	8099132	NM_018659	CYTL1	0.423303	6.826268e-6	1.182787e-1	2.365575e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation