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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 6029.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6029 8094130 NM_001105662 USP17 link to infopage ubiquitin specific peptidase 17

Fetching correlation data, please wait...
Getting list of correlations for id 6029.
Getting list of p-values for id 6029.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.099 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8094130 8094132 NM_001105662 USP17 link to infopage 0.988337 5.158227e-86 8.937659e-82 8.937659e-82
2 8094130 8094126 NM_001105662 USP17 link to infopage 0.988337 5.158227e-86 8.937659e-82 4.468830e-82
3 8094130 8094128 NM_001105662 USP17 link to infopage 0.988337 5.158227e-86 8.937659e-82 2.979220e-82
4 8094130 8094124 NM_001105662 USP17 link to infopage 0.988337 5.158227e-86 8.937659e-82 2.234415e-82
5 8094130 8094120 NM_001105662 USP17 link to infopage 0.988337 5.158227e-86 8.937659e-82 1.787532e-82
6 8094130 8094118 NM_001105662 USP17 link to infopage 0.988337 5.158227e-86 8.937659e-82 1.489610e-82
7 8094130 8094116 NM_001105662 USP17 link to infopage 0.988337 5.158227e-86 8.937659e-82 1.276808e-82
8 8094130 8094122 NM_001105662 USP17 link to infopage 0.983117 8.495710e-78 1.472052e-73 1.840065e-74
9 8094130 8009014 NM_006852 TLK2 link to infopage -0.731403 7.997798e-19 1.385778e-14 1.539754e-15
10 8094130 8019334 NM_178493 NOTUM link to infopage 0.729378 1.111663e-18 1.926178e-14 1.926178e-15
11 8094130 7995332 link to infopage 0.722107 3.539410e-18 6.132735e-14 5.575214e-15
12 8094130 7928870 ENST00000363306 link to infopage 0.721943 3.631706e-18 6.292658e-14 5.243881e-15
13 8094130 8062492 NM_020336 RALGAPB link to infopage -0.720248 4.731173e-18 8.197704e-14 6.305926e-15
14 8094130 7919888 NM_001038707 CDC42SE1 link to infopage -0.715871 9.284841e-18 1.608784e-13 1.149132e-14
15 8094130 8079869 NM_005778 RBM5 link to infopage -0.714876 1.080358e-17 1.871936e-13 1.247957e-14
16 8094130 7916747 NM_002227 JAK1 link to infopage -0.710040 2.235700e-17 3.873798e-13 2.421123e-14
17 8094130 7931810 NM_001300 KLF6 link to infopage -0.709257 2.511717e-17 4.352052e-13 2.560031e-14
18 8094130 8029640 NM_212550 BLOC1S3 link to infopage 0.705983 4.068766e-17 7.049951e-13 3.916640e-14
19 8094130 7937089 NM_173575 STK32C link to infopage 0.705680 4.253482e-17 7.370008e-13 3.878952e-14
20 8094130 7926127 NM_001025077 CELF2 link to infopage -0.702227 7.019785e-17 1.216318e-12 6.081591e-14
21 8094130 8138592 AB052759 TRA2A link to infopage -0.702028 7.224344e-17 1.251762e-12 5.960771e-14
22 8094130 8084887 ENST00000411400 link to infopage 0.701454 7.845726e-17 1.359429e-12 6.179223e-14
23 8094130 7988286 NM_025137 SPG11 link to infopage -0.701357 7.955861e-17 1.378512e-12 5.993531e-14
24 8094130 7955908 NM_005337 NCKAP1L link to infopage -0.700971 8.408289e-17 1.456904e-12 6.070434e-14
25 8094130 8050719 NM_006277 ITSN2 link to infopage -0.700141 9.468874e-17 1.640672e-12 6.562687e-14
26 8094130 8014865 NM_006160 NEUROD2 link to infopage 0.699530 1.033146e-16 1.790131e-12 6.885120e-14
27 8094130 8045279 link to infopage 0.699056 1.105238e-16 1.915046e-12 7.092764e-14
28 8094130 7907310 NM_015172 BAT2L2 link to infopage -0.697769 1.326426e-16 2.298299e-12 8.208210e-14
29 8094130 7996448 NM_003946 NOL3 link to infopage 0.696468 1.593623e-16 2.761270e-12 9.521621e-14
30 8094130 7944850 NM_032811 TBRG1 link to infopage -0.696325 1.626081e-16 2.817511e-12 9.391703e-14
31 8094130 8109843 NM_004946 DOCK2 link to infopage -0.695249 1.891077e-16 3.276670e-12 1.056990e-13
32 8094130 7914809 NM_024874 KIAA0319L link to infopage -0.695066 1.940070e-16 3.361559e-12 1.050487e-13
33 8094130 8015685 NM_001991 EZH1 link to infopage -0.693462 2.426473e-16 4.204350e-12 1.274045e-13
34 8094130 8073214 NM_001024843 TNRC6B link to infopage -0.693239 2.502754e-16 4.336521e-12 1.275447e-13
35 8094130 8167965 NM_002444 MSN link to infopage -0.692177 2.899444e-16 5.023866e-12 1.435390e-13
36 8094130 8012961 NM_006311 NCOR1 link to infopage -0.691647 3.119628e-16 5.405380e-12 1.501494e-13
37 8094130 8011542 NM_015113 ZZEF1 link to infopage -0.691245 3.297333e-16 5.713288e-12 1.544132e-13
38 8094130 8143988 NM_170606 MLL3 link to infopage -0.689940 3.944975e-16 6.835459e-12 1.798805e-13
39 8094130 8153959 NM_203447 DOCK8 link to infopage -0.689842 3.998008e-16 6.927349e-12 1.776243e-13
40 8094130 7923659 NM_032833 PPP1R15B link to infopage -0.688502 4.801332e-16 8.319268e-12 2.079817e-13
41 8094130 8045332 ENST00000458407 link to infopage 0.687698 5.356482e-16 9.281176e-12 2.263702e-13
42 8094130 7941769 NM_012308 KDM2A link to infopage -0.687023 5.869193e-16 1.016955e-11 2.421322e-13
43 8094130 7985695 NM_006738 AKAP13 link to infopage -0.686601 6.214647e-16 1.076812e-11 2.504214e-13
44 8094130 8014650 NM_006310 NPEPPS link to infopage -0.685274 7.432563e-16 1.287840e-11 2.926909e-13
45 8094130 8018922 NM_004762 CYTH1 link to infopage -0.685185 7.521057e-16 1.303174e-11 2.895941e-13
46 8094130 8065832 NM_015638 TRPC4AP link to infopage -0.684090 8.711433e-16 1.509430e-11 3.281370e-13
47 8094130 7920766 NM_018489 ASH1L link to infopage -0.683743 9.125821e-16 1.581231e-11 3.364321e-13
48 8094130 7955376 NM_173602 DIP2B link to infopage -0.681953 1.158261e-15 2.006918e-11 4.181079e-13
49 8094130 8110289 NM_022455 NSD1 link to infopage -0.681892 1.167691e-15 2.023258e-11 4.129097e-13
50 8094130 8074647 NM_058004 PI4KA link to infopage -0.680663 1.373980e-15 2.380696e-11 4.761392e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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