[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 6038.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6038	7985409	NR_003246	GOLGA6L5		golgin A6 family-like 5 (pseudogene)

Fetching correlation data, please wait...
Getting list of correlations for id 6038.
Getting list of p-values for id 6038.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.075 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7985409	7985450	NR_003246	GOLGA6L5	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7985409	7991722	NR_003246	GOLGA6L5	0.946116	3.023834e-52	5.239397e-48	2.619698e-48
3	7985409	7991110	NR_003246	GOLGA6L5	0.912096	1.116093e-41	1.933854e-37	6.446180e-38
4	7985409	7990943	NR_003246	GOLGA6L5	0.873516	5.604583e-34	9.711062e-30	2.427765e-30
5	7985409	7990922	NR_003246	GOLGA6L5	0.867871	4.575156e-33	7.927372e-29	1.585474e-29
6	7985409	7985472	NR_003246	GOLGA6L5	0.813180	5.891334e-26	1.020791e-21	1.701319e-22
7	7985409	7985562	NR_003246	GOLGA6L5	0.794743	4.531936e-24	7.852486e-20	1.121784e-20
8	7985409	7990894	NR_003246	GOLGA6L5	0.659692	1.962256e-14	3.400000e-10	4.250000e-11
9	7985409	7985221	ENST00000414905		0.613804	3.347745e-12	5.800637e-8	6.445152e-9
10	7985409	7991695	NR_027407	GOLGA8DP	0.579537	9.328929e-11	1.616423e-6	1.616423e-7
11	7985409	7986642	NR_027407	GOLGA8DP	0.551751	1.057547e-9	1.832412e-5	1.665829e-6
12	7985409	8163426	ENST00000410950		0.536163	3.756442e-9	6.508787e-5	5.423989e-6
13	7985409	7933976	ENST00000411182		0.524298	9.449924e-9	1.637388e-4	1.259530e-5
14	7985409	8137112	NM_012256	ZNF212	0.523174	1.029443e-8	1.783716e-4	1.274083e-5
15	7985409	8163424			0.519492	1.359502e-8	2.355608e-4	1.570406e-5
16	7985409	8131811			0.519400	1.368889e-8	2.371873e-4	1.482421e-5
17	7985409	7911578	NM_024011	CDK11A	0.519173	1.392452e-8	2.412701e-4	1.419236e-5
18	7985409	7958582	NM_032300	TCHP	0.518927	1.418345e-8	2.457566e-4	1.365315e-5
19	7985409	7981874	NM_001012423	GOLGA8E	0.510565	2.632346e-8	4.561065e-4	2.400561e-5
20	7985409	8091552			0.509763	2.790763e-8	4.835555e-4	2.417777e-5
21	7985409	7987139	NR_024074	GOLGA8IP	0.509598	2.824416e-8	4.893866e-4	2.330412e-5
22	7985409	7982350	NR_024074	GOLGA8IP	0.509598	2.824416e-8	4.893866e-4	2.224484e-5
23	7985409	7982256	NR_024074	GOLGA8IP	0.507773	3.224218e-8	5.586602e-4	2.428958e-5
24	7985409	8020650	BC012036		0.504762	4.004395e-8	6.938415e-4	2.891006e-5
25	7985409	7932834	NM_018109	MTPAP	0.503814	4.285014e-8	7.424644e-4	2.969858e-5
26	7985409	7982206	NR_024074	GOLGA8IP	0.500724	5.337135e-8	9.247654e-4	3.556790e-5
27	7985409	8017344	AK123839	LOC100129112	0.500003	5.615935e-8	9.730730e-4	3.603974e-5
28	7985409	7987027	NR_024074	GOLGA8IP	0.499031	6.013721e-8	1.041997e-3	3.721419e-5
29	7985409	8172504	NM_020137	GRIPAP1	0.498857	6.087925e-8	1.054855e-3	3.637430e-5
30	7985409	8167099	NR_024616	INE1	0.497982	6.473480e-8	1.121660e-3	3.738866e-5
31	7985409	8090351	NM_025112	ZXDC	0.497961	6.482735e-8	1.123263e-3	3.623431e-5
32	7985409	8003769	ENST00000459563		0.495105	7.911907e-8	1.370896e-3	4.284051e-5
33	7985409	8044649	NR_024077	WASH2P	0.494945	8.000432e-8	1.386235e-3	4.200712e-5
34	7985409	7978174	NM_014169	CHMP4A	0.490865	1.059924e-7	1.836531e-3	5.401562e-5
35	7985409	7998174	NM_018032	LUC7L	0.490548	1.083222e-7	1.876898e-3	5.362565e-5
36	7985409	7985099	NM_003978	PSTPIP1	0.489693	1.148409e-7	1.989849e-3	5.527359e-5
37	7985409	8013622	NM_144610	SGK494	0.489383	1.172902e-7	2.032288e-3	5.492670e-5
38	7985409	7917331	NR_024113	C1orf52	0.488531	1.242955e-7	2.153668e-3	5.667547e-5
39	7985409	8013159	NM_001082968	TOM1L2	0.486912	1.387222e-7	2.403640e-3	6.163180e-5
40	7985409	7987248	NR_027410	GOLGA8B	0.485265	1.550324e-7	2.686246e-3	6.715614e-5
41	7985409	8079630	NM_015933	CCDC72	0.484468	1.635632e-7	2.834059e-3	6.912339e-5
42	7985409	8050813	NM_175629	DNMT3A	0.482735	1.836811e-7	3.182642e-3	7.577719e-5
43	7985409	8140107	NM_032317	DNAJC30	-0.481507	1.993310e-7	3.453809e-3	8.032113e-5
44	7985409	7986541	NR_003659	WASH3P	0.481226	2.030908e-7	3.518954e-3	7.997622e-5
45	7985409	7981752	NR_027407	GOLGA8DP	0.479379	2.295238e-7	3.976959e-3	8.837686e-5
46	7985409	7981895	NM_001012423	GOLGA8E	0.478422	2.444780e-7	4.236071e-3	9.208850e-5
47	7985409	7960370	NM_032680	EFCAB4B	0.476832	2.713934e-7	4.702434e-3	1.000518e-4
48	7985409	7899346	NM_015933	CCDC72	0.476772	2.724537e-7	4.720805e-3	9.835011e-5
49	7985409	8141241	NM_020429	SMURF1	0.476350	2.800947e-7	4.853200e-3	9.904491e-5
50	7985409	7987114	NR_024074	GOLGA8IP	0.474291	3.203162e-7	5.550119e-3	1.110024e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation