[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 10585.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
10585	7987139	NR_024074	GOLGA8IP		golgin A8 family, member I (pseudogene)

Fetching correlation data, please wait...
Getting list of correlations for id 10585.
Getting list of p-values for id 10585.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.087 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7987139	7982350	NR_024074	GOLGA8IP	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7987139	7982256	NR_024074	GOLGA8IP	0.914932	2.219305e-42	3.845390e-38	1.922695e-38
3	7987139	7987027	NR_024074	GOLGA8IP	0.855721	3.076539e-31	5.330719e-27	1.776906e-27
4	7987139	7982206	NR_024074	GOLGA8IP	0.720015	4.906194e-18	8.500962e-14	2.125240e-14
5	7987139	7987114	NR_024074	GOLGA8IP	0.691316	3.265421e-16	5.657996e-12	1.131599e-12
6	7987139	7986947	NR_024074	GOLGA8IP	0.667281	7.684336e-15	1.331465e-10	2.219108e-11
7	7987139	7915758	NM_021639	GPBP1L1	0.610282	4.801097e-12	8.318862e-8	1.188409e-8
8	7987139	8176163	NM_001081573	GAB3	0.608879	5.535416e-12	9.591216e-8	1.198902e-8
9	7987139	8091120	NM_001039547	GK5	0.605386	7.866767e-12	1.363075e-7	1.514528e-8
10	7987139	7981859	NR_024074	GOLGA8IP	0.595945	1.991315e-11	3.450351e-7	3.450351e-8
11	7987139	7967841	NM_001161344	CHFR	0.591293	3.112695e-11	5.393367e-7	4.903061e-8
12	7987139	8130211	NM_182961	SYNE1	0.587102	4.626690e-11	8.016665e-7	6.680554e-8
13	7987139	8150036	NM_015254	KIF13B	0.581256	7.967009e-11	1.380444e-6	1.061880e-7
14	7987139	7982230	NR_024074	GOLGA8IP	0.579141	9.672980e-11	1.676037e-6	1.197169e-7
15	7987139	7960370	NM_032680	EFCAB4B	0.578076	1.065947e-10	1.846967e-6	1.231311e-7
16	7987139	8163383	NM_022486	SUSD1	0.577921	1.081132e-10	1.873277e-6	1.170798e-7
17	7987139	7965812	NM_024312	GNPTAB	0.575213	1.381769e-10	2.394192e-6	1.408348e-7
18	7987139	8043363	NR_024204	NCRNA00152	0.574487	1.475086e-10	2.555882e-6	1.419935e-7
19	7987139	8099471	NM_031950	FGFBP2	0.574092	1.528504e-10	2.648439e-6	1.393915e-7
20	7987139	7981895	NM_001012423	GOLGA8E	0.570952	2.023655e-10	3.506387e-6	1.753193e-7
21	7987139	8105340	NM_006144	GZMA	0.566021	3.125918e-10	5.416278e-6	2.579180e-7
22	7987139	8079662	NM_006321	ARIH2	0.565553	3.256482e-10	5.642507e-6	2.564776e-7
23	7987139	8075182	NM_005080	XBP1	0.556988	6.807093e-10	1.179465e-5	5.128109e-7
24	7987139	8123062	NM_020823	TMEM181	0.554903	8.119844e-10	1.406925e-5	5.862189e-7
25	7987139	7928369	NM_004922	SEC24C	0.551537	1.076651e-9	1.865514e-5	7.462056e-7
26	7987139	7951752	NM_020886	USP28	0.550999	1.125987e-9	1.950997e-5	7.503836e-7
27	7987139	8056545	NM_013233	STK39	0.550858	1.139195e-9	1.973884e-5	7.310680e-7
28	7987139	8042259	NM_005917	MDH1	0.549760	1.247949e-9	2.162321e-5	7.722575e-7
29	7987139	8073088	NM_021822	APOBEC3G	0.549491	1.276058e-9	2.211026e-5	7.624226e-7
30	7987139	7904469	NM_015326	SRGAP2	0.549059	1.322471e-9	2.291445e-5	7.638150e-7
31	7987139	8020806	NM_017831	RNF125	0.545950	1.707899e-9	2.959276e-5	9.546052e-7
32	7987139	7985221	ENST00000414905		0.545192	1.817114e-9	3.148514e-5	9.839106e-7
33	7987139	8035581	NM_001017392	SUGP2	0.544909	1.859483e-9	3.221926e-5	9.763411e-7
34	7987139	8173009	NM_015107	PHF8	0.543248	2.128425e-9	3.687922e-5	1.084683e-6
35	7987139	7920810	NM_001037533	GON4L	0.540670	2.621151e-9	4.541667e-5	1.297619e-6
36	7987139	7900235	NM_012090	MACF1	0.540576	2.641043e-9	4.576135e-5	1.271149e-6
37	7987139	8151101	NM_001080416	MYBL1	0.539518	2.875264e-9	4.981970e-5	1.346478e-6
38	7987139	8038989	NM_198457	ZNF600	0.538711	3.067078e-9	5.314326e-5	1.398507e-6
39	7987139	8139100	M30894	TARP	0.538240	3.184535e-9	5.517843e-5	1.414832e-6
40	7987139	7939383	NM_024841	PRR5L	0.536474	3.665030e-9	6.350398e-5	1.587599e-6
41	7987139	8141305	NM_032164	ZNF394	0.534700	4.217271e-9	7.307265e-5	1.782260e-6
42	7987139	7976876	NM_001376	DYNC1H1	0.534349	4.335713e-9	7.512491e-5	1.788688e-6
43	7987139	8093685	NM_002111	HTT	0.534193	4.389030e-9	7.604872e-5	1.768575e-6
44	7987139	8022531	NM_000271	NPC1	0.533314	4.703471e-9	8.149704e-5	1.852205e-6
45	7987139	8077612	NM_001025930	TTLL3	0.532478	5.021855e-9	8.701368e-5	1.933637e-6
46	7987139	7991722	NR_003246	GOLGA6L5	0.532253	5.111236e-9	8.856239e-5	1.925269e-6
47	7987139	8175052	NM_001130847	AIFM1	0.532209	5.128893e-9	8.886834e-5	1.890816e-6
48	7987139	7978174	NM_014169	CHMP4A	0.531726	5.326421e-9	9.229089e-5	1.922727e-6
49	7987139	8068974	NM_003274	TRAPPC10	0.531378	5.473152e-9	9.483331e-5	1.935374e-6
50	7987139	7962869	NM_004818	DDX23	0.530958	5.655192e-9	9.798750e-5	1.959750e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
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