[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 624.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
624	8005626	NR_003025	SNORA59A		small nucleolar RNA, H/ACA box 59A

Fetching correlation data, please wait...
Getting list of correlations for id 624.
Getting list of p-values for id 624.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.072 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8005626	7897953	NR_003025	SNORA59A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8005626	7926670	ENST00000415292		-0.436543	3.232759e-6	5.601402e-2	2.800701e-2
3	8005626	8086141	NM_014805	EPM2AIP1	-0.429149	4.926598e-6	8.536316e-2	2.845439e-2
4	8005626	7958846	NM_002834	PTPN11	-0.418761	8.758335e-6	1.517557e-1	3.793892e-2
5	8005626	8159259	NM_014582	OBP2A	0.404860	1.837013e-5	3.182992e-1	6.365984e-2
6	8005626	8134374	ENST00000459298		-0.402445	2.082394e-5	3.608163e-1	6.013605e-2
7	8005626	8043687	AK304740	ANKRD36	-0.401487	2.187958e-5	3.791075e-1	5.415822e-2
8	8005626	7986327			-0.394273	3.160050e-5	5.475419e-1	6.844273e-2
9	8005626	8155234	NM_032226	ZCCHC7	-0.393675	3.256621e-5	5.642746e-1	6.269718e-2
10	8005626	8089234	NM_014415	ZBTB11	-0.391875	3.564128e-5	6.175565e-1	6.175565e-2
11	8005626	8008016	NM_014726	TBKBP1	0.384705	5.079239e-5	8.800798e-1	8.000726e-2
12	8005626	7986665	NM_030922	NIPA2	-0.384397	5.156155e-5	8.934069e-1	7.445058e-2
13	8005626	8095262	NM_005612	REST	-0.380925	6.102235e-5	1.057334e+0	8.133341e-2
14	8005626	7958130	NM_003299	HSP90B1	-0.380332	6.279016e-5	1.087965e+0	7.771179e-2
15	8005626	7990582	NM_020843	SCAPER	-0.379674	6.480929e-5	1.122951e+0	7.486338e-2
16	8005626	7985555	NM_024580	EFTUD1	-0.378596	6.824782e-5	1.182530e+0	7.390813e-2
17	8005626	8151952	NM_024759	NIPAL2	-0.378564	6.835268e-5	1.184347e+0	6.966747e-2
18	8005626	7942032	NM_018312	PPP6R3	-0.378536	6.844564e-5	1.185958e+0	6.588653e-2
19	8005626	8029847	NM_001039885	FKRP	0.377852	7.072147e-5	1.225391e+0	6.449426e-2
20	8005626	8000692	NM_001031827	BOLA2	-0.377825	7.081086e-5	1.226940e+0	6.134699e-2
21	8005626	8165642	NM_053045	TMEM203	-0.376146	7.670656e-5	1.329095e+0	6.329022e-2
22	8005626	7900413	NM_005857	ZMPSTE24	-0.374286	8.377304e-5	1.451536e+0	6.597889e-2
23	8005626	8000651	NM_015092	SMG1	-0.374041	8.474645e-5	1.468402e+0	6.384355e-2
24	8005626	8163964	NM_005388	PDCL	-0.373328	8.764250e-5	1.518582e+0	6.327424e-2
25	8005626	8000834	NM_015092	SMG1	-0.372260	9.215237e-5	1.596724e+0	6.386896e-2
26	8005626	8152096	NM_145690	YWHAZ	-0.371255	9.659314e-5	1.673669e+0	6.437190e-2
27	8005626	8141024	NM_005868	BET1	-0.370232	1.013165e-4	1.755512e+0	6.501896e-2
28	8005626	7984641	NM_005744	ARIH1	-0.370111	1.018868e-4	1.765393e+0	6.304974e-2
29	8005626	8138922	NM_015483	KBTBD2	-0.369604	1.043230e-4	1.807605e+0	6.233121e-2
30	8005626	7965064	NM_020841	OSBPL8	-0.369147	1.065585e-4	1.846340e+0	6.154466e-2
31	8005626	8074773	NM_001017964	YDJC	0.368285	1.109061e-4	1.921671e+0	6.198938e-2
32	8005626	7932160	BC072452	FAM107B	-0.367864	1.130884e-4	1.959483e+0	6.123385e-2
33	8005626	8169541	NM_144658	DOCK11	-0.366338	1.213340e-4	2.102354e+0	6.370771e-2
34	8005626	8122600	NM_001127715	STXBP5	-0.364275	1.333715e-4	2.310927e+0	6.796845e-2
35	8005626	7925565	NM_031844	HNRNPU	-0.363557	1.378167e-4	2.387951e+0	6.822716e-2
36	8005626	8120758	NM_015571	SENP6	-0.362711	1.432270e-4	2.481694e+0	6.893595e-2
37	8005626	8008834	NM_004859	CLTC	-0.361862	1.488539e-4	2.579191e+0	6.970787e-2
38	8005626	8116227	NM_020666	CLK4	-0.361631	1.504222e-4	2.606365e+0	6.858855e-2
39	8005626	8090898	NM_005862	STAG1	-0.361236	1.531356e-4	2.653380e+0	6.803540e-2
40	8005626	7936307	NM_005871	SMNDC1	-0.361165	1.536295e-4	2.661938e+0	6.654845e-2
41	8005626	8004545	NM_001678	ATP1B2	0.361113	1.539889e-4	2.668166e+0	6.507721e-2
42	8005626	7928408	NM_015037	KIAA0913	0.360873	1.556713e-4	2.697317e+0	6.422183e-2
43	8005626	8108099	NM_021982	SEC24A	-0.360243	1.601584e-4	2.775064e+0	6.453637e-2
44	8005626	7965048	NM_004537	NAP1L1	-0.359285	1.672200e-4	2.897420e+0	6.585046e-2
45	8005626	7932433	NM_182543	NSUN6	-0.359172	1.680720e-4	2.912184e+0	6.471520e-2
46	8005626	8025551	NM_018381	C19orf66	0.359125	1.684295e-4	2.918379e+0	6.344301e-2
47	8005626	8069301	NM_001849	COL6A2	0.358330	1.745400e-4	3.024255e+0	6.434584e-2
48	8005626	8071649	BC043345	BMS1	-0.358130	1.761142e-4	3.051531e+0	6.357355e-2
49	8005626	8012581	NM_004853	STX8	-0.358053	1.767213e-4	3.062051e+0	6.249083e-2
50	8005626	8081362	NM_024548	CEP97	-0.357801	1.787304e-4	3.096861e+0	6.193722e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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