[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 6423.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6423	8179097	NM_024839	RPP21		ribonuclease P/MRP 21kDa subunit

Fetching correlation data, please wait...
Getting list of correlations for id 6423.
Getting list of p-values for id 6423.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.084 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179097	8177782	NM_024839	RPP21	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179097	8117881	NM_024839	RPP21	0.939005	1.493444e-49	2.587691e-45	1.293846e-45
3	8179097	8139468	NM_004749	TBRG4	0.605343	7.900510e-12	1.368921e-7	4.563071e-8
4	8179097	8033002	NM_004793	LONP1	0.584837	5.718180e-11	9.907890e-7	2.476973e-7
5	8179097	8073612	NM_000714	TSPO	0.572904	1.700224e-10	2.945978e-6	5.891957e-7
6	8179097	8031102	NM_015629	PRPF31	0.555110	7.979229e-10	1.382561e-5	2.304268e-6
7	8179097	8148728	NM_001916	CYC1	0.551282	1.099734e-9	1.905510e-5	2.722157e-6
8	8179097	8124998	NM_033177	BAT4	0.545182	1.818534e-9	3.150974e-5	3.938718e-6
9	8179097	8033069	NM_175614	NDUFA11	0.542249	2.307828e-9	3.998773e-5	4.443081e-6
10	8179097	7977409	NM_001311	CRIP1	0.541404	2.470778e-9	4.281117e-5	4.281117e-6
11	8179097	8158544	NM_014064	METTL11A	0.537572	3.358718e-9	5.819651e-5	5.290592e-6
12	8179097	8025788	NM_001128849	SMARCA4	0.537083	3.491932e-9	6.050470e-5	5.042059e-6
13	8179097	8013860	NM_078471	MYO18A	0.535478	3.965937e-9	6.871779e-5	5.285984e-6
14	8179097	8130003	NM_031287	SF3B5	0.535428	3.981728e-9	6.899140e-5	4.927957e-6
15	8179097	8037389	NM_019108	C19orf61	0.534555	4.265655e-9	7.391100e-5	4.927400e-6
16	8179097	7899323	NM_032872	SYTL1	0.532999	4.820938e-9	8.353239e-5	5.220774e-6
17	8179097	8036136	NM_024660	TMEM149	0.529960	6.111652e-9	1.058966e-4	6.229211e-6
18	8179097	8054004	NM_017789	SEMA4C	0.525925	8.344474e-9	1.445847e-4	8.032484e-6
19	8179097	7992021	NM_005861	STUB1	0.524266	9.472887e-9	1.641367e-4	8.638774e-6
20	8179097	8175924	NM_003491	NAA10	0.523534	1.001629e-8	1.735523e-4	8.677613e-6
21	8179097	7899160	NM_001803	CD52	0.521511	1.167689e-8	2.023255e-4	9.634550e-6
22	8179097	8076185	NM_175709	CBX7	0.519763	1.332092e-8	2.308115e-4	1.049143e-5
23	8179097	8037023	NM_020158	EXOSC5	0.519501	1.358585e-8	2.354021e-4	1.023487e-5
24	8179097	7971858	ENST00000334406		0.518364	1.479486e-8	2.563505e-4	1.068127e-5
25	8179097	8003448	NM_013275	ANKRD11	0.513625	2.103366e-8	3.644503e-4	1.457801e-5
26	8179097	7911730	NM_018216	PANK4	0.511881	2.390955e-8	4.142808e-4	1.593388e-5
27	8179097	7942372	NM_000803	FOLR2	0.509406	2.864269e-8	4.962919e-4	1.838118e-5
28	8179097	7911422	NM_016547	SDF4	0.507956	3.181861e-8	5.513210e-4	1.969004e-5
29	8179097	7960559	NM_080730	IFFO1	0.505400	3.825144e-8	6.627827e-4	2.285457e-5
30	8179097	7949746	NM_021173	POLD4	0.505293	3.854846e-8	6.679291e-4	2.226430e-5
31	8179097	7941879	NM_198517	TBC1D10C	0.504663	4.032922e-8	6.987844e-4	2.254143e-5
32	8179097	7959294	NM_032790	ORAI1	0.501514	5.046751e-8	8.744505e-4	2.732658e-5
33	8179097	8012383	NM_032354	TMEM107	0.501506	5.049622e-8	8.749480e-4	2.651357e-5
34	8179097	7924553	ENST00000415210		0.500150	5.557867e-8	9.630117e-4	2.832387e-5
35	8179097	7910790	ENST00000450819		0.499036	6.011819e-8	1.041668e-3	2.976194e-5
36	8179097	8038458	NM_007254	PNKP	0.498457	6.261373e-8	1.084908e-3	3.013634e-5
37	8179097	8027205	NM_015965	NDUFA13	0.498194	6.378011e-8	1.105118e-3	2.986805e-5
38	8179097	8032009	NM_017550	MIER2	0.497466	6.711398e-8	1.162884e-3	3.060221e-5
39	8179097	8099029	NM_024309	TNIP2	0.494845	8.056326e-8	1.395920e-3	3.579281e-5
40	8179097	7949172	NM_004579	MAP4K2	0.494666	8.156951e-8	1.413355e-3	3.533387e-5
41	8179097	8005576	NM_139033	MAPK7	0.491070	1.045155e-7	1.810940e-3	4.416927e-5
42	8179097	8009796	NM_014738	KIAA0195	0.487018	1.377362e-7	2.386555e-3	5.682273e-5
43	8179097	7996685	NM_014329	EDC4	0.485563	1.519464e-7	2.632776e-3	6.122734e-5
44	8179097	8110327	NM_006480	RGS14	0.484045	1.682669e-7	2.915561e-3	6.626275e-5
45	8179097	8028563	NM_021107	MRPS12	0.483547	1.739746e-7	3.014457e-3	6.698794e-5
46	8179097	7898276	ENST00000321418		0.483206	1.779902e-7	3.084037e-3	6.704428e-5
47	8179097	8124742	NM_005275	GNL1	0.482354	1.884065e-7	3.264519e-3	6.945786e-5
48	8179097	8137874	NM_032415	CARD11	0.481580	1.983777e-7	3.437291e-3	7.161023e-5
49	8179097	7987554	NM_018163	DNAJC17	0.480872	2.079267e-7	3.602746e-3	7.352542e-5
50	8179097	8062206	NM_080748	ROMO1	0.480374	2.149116e-7	3.723773e-3	7.447546e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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