[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 6619.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6619	8007865	ENST00000410973

Fetching correlation data, please wait...
Getting list of correlations for id 6619.
Getting list of p-values for id 6619.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.087 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8007865	8007883	ENST00000410973		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8007865	8016257	ENST00000459552		0.774601	3.223774e-22	5.585833e-18	2.792917e-18
3	8007865	8007794	NM_001039083	ARL17B	0.561309	4.704866e-10	8.152121e-6	2.717374e-6
4	8007865	8016285	NM_001113738	ARL17A	0.548445	1.391346e-9	2.410786e-5	6.026965e-6
5	8007865	8016300	NM_001113738	ARL17A	0.546934	1.575552e-9	2.729959e-5	5.459918e-6
6	8007865	8003769	ENST00000459563		0.525017	8.945077e-9	1.549914e-4	2.583189e-5
7	8007865	8016266	NM_015443	KIAA1267	0.494602	8.193244e-8	1.419643e-3	2.028062e-4
8	8007865	8167099	NR_024616	INE1	0.490259	1.104861e-7	1.914393e-3	2.392991e-4
9	8007865	8135197	NM_001031618	SPDYE2	0.481461	1.999501e-7	3.464535e-3	3.849484e-4
10	8007865	8137542	NM_053043	RBM33	0.478258	2.471296e-7	4.282014e-3	4.282014e-4
11	8007865	8011110	ENST00000410723		0.477629	2.575609e-7	4.462758e-3	4.057052e-4
12	8007865	8118207	NR_002971	SNORA38	0.472889	3.508010e-7	6.078328e-3	5.065274e-4
13	8007865	8016787	ENST00000459088		0.469508	4.360818e-7	7.555989e-3	5.812299e-4
14	8007865	hsa-miR-7-1-3p			-0.460822	7.545732e-7	1.307449e-2	9.338921e-4
15	8007865	8135204	NM_001031618	SPDYE2	0.455670	1.037274e-6	1.797285e-2	1.198190e-3
16	8007865	8163424			0.451843	1.309423e-6	2.268838e-2	1.418024e-3
17	8007865	7899417	NM_018053	XKR8	0.451355	1.348599e-6	2.336717e-2	1.374539e-3
18	8007865	8141750	NM_001031618	SPDYE2	0.448887	1.564578e-6	2.710944e-2	1.506080e-3
19	8007865	8017702	ENST00000410341		0.441223	2.463480e-6	4.268472e-2	2.246564e-3
20	8007865	8084739	NR_024413	FLJ42393	0.438373	2.908247e-6	5.039119e-2	2.519560e-3
21	8007865	8016259	NM_001006607	LRRC37A2	0.438277	2.924434e-6	5.067166e-2	2.412936e-3
22	8007865	8020650	BC012036		0.437486	3.061535e-6	5.304722e-2	2.411237e-3
23	8007865	8071274	L20860	GP1BB	0.436925	3.162457e-6	5.479590e-2	2.382430e-3
24	8007865	7991110	NR_003246	GOLGA6L5	0.436191	3.299097e-6	5.716345e-2	2.381810e-3
25	8007865	8111812	ENST00000391265		0.432478	4.080478e-6	7.070245e-2	2.828098e-3
26	8007865	7914500	AF258548	C1orf91	0.431398	4.338614e-6	7.517517e-2	2.891353e-3
27	8007865	7985409	NR_003246	GOLGA6L5	0.430522	4.559141e-6	7.899624e-2	2.925787e-3
28	8007865	7985450	NR_003246	GOLGA6L5	0.430522	4.559141e-6	7.899624e-2	2.821294e-3
29	8007865	hsa-miR-141	MI0000457		0.430466	4.573752e-6	7.924940e-2	2.732738e-3
30	8007865	7962951	NM_003482	MLL2	0.429731	4.767586e-6	8.260796e-2	2.753599e-3
31	8007865	7959314	NM_015048	SETD1B	0.429100	4.940063e-6	8.559648e-2	2.761177e-3
32	8007865	7967898	ENST00000459056		0.426788	5.624270e-6	9.745172e-2	3.045366e-3
33	8007865	7937474	AF435951	NS3BP	0.425689	5.979994e-6	1.036154e-1	3.139859e-3
34	8007865	7975457	AK090477		0.425130	6.168736e-6	1.068857e-1	3.143697e-3
35	8007865	8011112	ENST00000459614		0.420369	8.022160e-6	1.390000e-1	3.971427e-3
36	8007865	hsa-miR-142-5p			0.419050	8.621531e-6	1.493853e-1	4.149591e-3
37	8007865	8173009	NM_015107	PHF8	0.413585	1.158463e-5	2.007268e-1	5.425049e-3
38	8007865	7948574	NM_024811	CPSF7	0.413520	1.162510e-5	2.014282e-1	5.300741e-3
39	8007865	7941563	ENST00000459039		0.412627	1.219400e-5	2.112854e-1	5.417575e-3
40	8007865	8133654	NM_001099435	SPDYE5	0.412428	1.232399e-5	2.135377e-1	5.338443e-3
41	8007865	8003465			0.412303	1.240636e-5	2.149650e-1	5.243050e-3
42	8007865	8133582	NR_003664	SPDYE8P	0.411842	1.271558e-5	2.203229e-1	5.245783e-3
43	8007865	7991722	NR_003246	GOLGA6L5	0.411238	1.313073e-5	2.275162e-1	5.291074e-3
44	8007865	8026350	NM_207390	CLEC17A	0.410160	1.390453e-5	2.409238e-1	5.475541e-3
45	8007865	8142979	ENST00000362757		0.409946	1.406304e-5	2.436704e-1	5.414897e-3
46	8007865	7975455			0.408570	1.512351e-5	2.620450e-1	5.696630e-3
47	8007865	8113035	ENST00000384400		0.408564	1.512869e-5	2.621348e-1	5.577337e-3
48	8007865	8077612	NM_001025930	TTLL3	0.404510	1.870815e-5	3.241562e-1	6.753253e-3
49	8007865	8036938	NM_024876	ADCK4	0.404464	1.875352e-5	3.249423e-1	6.631475e-3
50	8007865	8133590	NR_003664	SPDYE8P	0.404212	1.900029e-5	3.292180e-1	6.584361e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation