[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 6945.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6945	8178439	NM_014070	C6orf15		chromosome 6 open reading frame 15

Fetching correlation data, please wait...
Getting list of correlations for id 6945.
Getting list of p-values for id 6945.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.098 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178439	8179713	NM_014070	C6orf15	0.983648	1.660667e-78	2.877438e-74	2.877438e-74
2	8178439	8124859	NM_014070	C6orf15	0.981388	1.233760e-75	2.137736e-71	1.068868e-71
3	8178439	8049152	NM_000751	CHRND	0.731260	8.187470e-19	1.418643e-14	4.728810e-15
4	8178439	8013042	NM_000422	KRT17	0.725610	2.035310e-18	3.526582e-14	8.816456e-15
5	8178439	7897691	NM_020780	PTCHD2	0.703479	5.858772e-17	1.015149e-12	2.030299e-13
6	8178439	8170412	NM_005364	MAGEA8	0.702305	6.941549e-17	1.202762e-12	2.004604e-13
7	8178439	7995776	NM_005954	MT3	0.699344	1.060809e-16	1.838064e-12	2.625806e-13
8	8178439	7921936	NM_177398	LMX1A	0.698704	1.161850e-16	2.013138e-12	2.516422e-13
9	8178439	8073296	NM_005297	MCHR1	0.697363	1.404748e-16	2.434006e-12	2.704451e-13
10	8178439	8011808	NM_001104577	GPR172B	0.695432	1.843348e-16	3.193970e-12	3.193970e-13
11	8178439	8054020	BC038583	FAM178B	0.694439	2.117901e-16	3.669687e-12	3.336079e-13
12	8178439	8019005	NM_001082575	HRNBP3	0.692814	2.654589e-16	4.599606e-12	3.833005e-13
13	8178439	7992140	ENST00000455256		0.691143	3.343965e-16	5.794088e-12	4.456991e-13
14	8178439	8042513	ENST00000459231		0.691058	3.383295e-16	5.862235e-12	4.187311e-13
15	8178439	8007537	NM_145273	CD300LG	0.689109	4.420028e-16	7.658583e-12	5.105722e-13
16	8178439	8015189	NM_030966	KRTAP1-3	0.687848	5.248056e-16	9.093306e-12	5.683316e-13
17	8178439	8019585	NM_030966	KRTAP1-3	0.687848	5.248056e-16	9.093306e-12	5.349004e-13
18	8178439	8073822	hsa-let-7a-3		0.687481	5.516574e-16	9.558568e-12	5.310316e-13
19	8178439	7937560	NM_002457	MUC2	0.685077	7.631128e-16	1.322246e-11	6.959187e-13
20	8178439	8126556	NM_023932	DLK2	0.684592	8.144997e-16	1.411284e-11	7.056418e-13
21	8178439	7933498	ENST00000311787		0.683975	8.846317e-16	1.532801e-11	7.299054e-13
22	8178439	8033487	NM_032447	FBN3	0.683763	9.100585e-16	1.576858e-11	7.167538e-13
23	8178439	7905507	NM_178428	LCE2A	0.682997	1.008111e-15	1.746754e-11	7.594581e-13
24	8178439	8165416	NM_203468	ENTPD2	0.682503	1.076551e-15	1.865339e-11	7.772247e-13
25	8178439	8070786	NM_198688	KRTAP10-6	0.682284	1.108397e-15	1.920519e-11	7.682078e-13
26	8178439	7900792	NM_002840	PTPRF	0.682034	1.145790e-15	1.985310e-11	7.635809e-13
27	8178439	7915351	NM_144990	SLFNL1	0.681210	1.278133e-15	2.214622e-11	8.202302e-13
28	8178439	8029446	NM_001127893	CEACAM19	0.680135	1.472958e-15	2.552194e-11	9.114979e-13
29	8178439	7937200	NM_015722	CALY	0.679791	1.541315e-15	2.670637e-11	9.209092e-13
30	8178439	8046922	NM_000090	COL3A1	0.678748	1.767486e-15	3.062523e-11	1.020841e-12
31	8178439	7999433	ENST00000390926		0.678411	1.847341e-15	3.200887e-11	1.032544e-12
32	8178439	8175815	NM_001039582	PNCK	0.678111	1.921195e-15	3.328854e-11	1.040267e-12
33	8178439	7905324	BC002469	C1orf56	0.677751	2.013753e-15	3.489229e-11	1.057342e-12
34	8178439	8066757	NM_022829	SLC13A3	0.677711	2.024252e-15	3.507421e-11	1.031594e-12
35	8178439	8137151	NM_198455	SSPO	0.676730	2.300276e-15	3.985688e-11	1.138768e-12
36	8178439	7987701	NM_016642	SPTBN5	0.676402	2.400227e-15	4.158874e-11	1.155243e-12
37	8178439	7906163	NR_026549	RHBG	0.675866	2.573241e-15	4.458655e-11	1.205042e-12
38	8178439	8114550	NM_004883	NRG2	0.675162	2.818352e-15	4.883359e-11	1.285094e-12
39	8178439	7959402	NM_030765	B3GNT4	0.674429	3.098162e-15	5.368186e-11	1.376458e-12
40	8178439	8069148	NM_198695	KRTAP10-8	0.673631	3.433128e-15	5.948582e-11	1.487145e-12
41	8178439	8030582	NM_001145809	MYH14	0.673513	3.485413e-15	6.039176e-11	1.472970e-12
42	8178439	8010287	NM_030968	C1QTNF1	0.673462	3.508296e-15	6.078825e-11	1.447339e-12
43	8178439	7990309	NM_022369	STRA6	0.672938	3.752418e-15	6.501815e-11	1.512050e-12
44	8178439	8130859	NM_214462	DACT2	0.672839	3.800286e-15	6.584756e-11	1.496535e-12
45	8178439	8110821	NM_001044	SLC6A3	0.672200	4.123674e-15	7.145089e-11	1.587798e-12
46	8178439	7946860	NM_000352	ABCC8	0.672035	4.211609e-15	7.297454e-11	1.586403e-12
47	8178439	8135099	NM_133457	EMID2	0.670023	5.439282e-15	9.424645e-11	2.005244e-12
48	8178439	8010768			0.669999	5.455796e-15	9.453258e-11	1.969429e-12
49	8178439	7944825	X64981	OR10D1P	0.669748	5.632400e-15	9.759260e-11	1.991686e-12
50	8178439	8053467	NM_000542	SFTPB	0.669074	6.132979e-15	1.062661e-10	2.125322e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation