Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
74	hsa-miR-17-3p

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	hsa-miR-17-3p	hsa-miR-579	MI0003586			0.681610	1.212194e-15	2.100368e-11	2.100368e-11
2	hsa-miR-17-3p	hsa-miR-17	MI0000071			0.656515	2.882307e-14	4.994174e-10	2.497087e-10
3	hsa-miR-17-3p	hsa-miR-301a	MI0000745			0.654446	3.693212e-14	6.399228e-10	2.133076e-10
4	hsa-miR-17-3p	hsa-miR-374a	MI0000782			0.653058	4.356793e-14	7.549016e-10	1.887254e-10
5	hsa-miR-17-3p	hsa-miR-18b	MI0001518			0.648799	7.195716e-14	1.246802e-9	2.493603e-10
6	hsa-miR-17-3p	hsa-miR-18a	MI0000072			0.639610	2.068829e-13	3.584661e-9	5.974434e-10
7	hsa-miR-17-3p	hsa-miR-21	MI0000077			0.633163	4.249846e-13	7.363708e-9	1.051958e-9
8	hsa-miR-17-3p	hsa-miR-106a	MI0000113			0.623630	1.195407e-12	2.071282e-8	2.589102e-9
9	hsa-miR-17-3p	hsa-miR-101				0.609603	5.143685e-12	8.912463e-8	9.902737e-9
10	hsa-miR-17-3p	hsa-miR-26b	MI0000084			0.605596	7.703058e-12	1.334709e-7	1.334709e-8
11	hsa-miR-17-3p	hsa-miR-126	MI0000471			0.604477	8.613894e-12	1.492529e-7	1.356845e-8
12	hsa-miR-17-3p	hsa-miR-20a	MI0000076			0.600718	1.249879e-11	2.165666e-7	1.804722e-8
13	hsa-miR-17-3p	hsa-miR-642				-0.599866	1.358985e-11	2.354712e-7	1.811317e-8
14	hsa-miR-17-3p	hsa-miR-15a-3p				0.598446	1.561631e-11	2.705838e-7	1.932742e-8
15	hsa-miR-17-3p	hsa-miR-590-5p				0.592802	2.694944e-11	4.669529e-7	3.113019e-8
16	hsa-miR-17-3p	hsa-miR-20b	MI0001519			0.581738	7.620951e-11	1.320482e-6	8.253013e-8
17	hsa-miR-17-3p	hsa-miR-191	MI0000465			-0.577306	1.143269e-10	1.980943e-6	1.165260e-7
18	hsa-miR-17-3p	hsa-miR-197	MI0000239			-0.576547	1.224770e-10	2.122160e-6	1.178978e-7
19	hsa-miR-17-3p	hsa-miR-660	MI0003684			0.565243	3.345762e-10	5.797203e-6	3.051159e-7
20	hsa-miR-17-3p	hsa-miR-15a	MI0000069			0.562759	4.151518e-10	7.193335e-6	3.596668e-7
21	hsa-miR-17-3p	hsa-miR-140-5p				0.560958	4.849210e-10	8.402226e-6	4.001060e-7
22	hsa-miR-17-3p	hsa-miR-16				0.555522	7.706088e-10	1.335234e-5	6.069245e-7
23	hsa-miR-17-3p	hsa-miR-93	MI0000095			0.555436	7.762658e-10	1.345036e-5	5.847981e-7
24	hsa-miR-17-3p	hsa-miR-199a-3p				0.551202	1.107044e-9	1.918175e-5	7.992396e-7
25	hsa-miR-17-3p	hsa-miR-106b	MI0000734			0.544082	1.989023e-9	3.446380e-5	1.378552e-6
26	hsa-miR-17-3p	hsa-miR-126-5p				0.543202	2.136504e-9	3.701921e-5	1.423816e-6
27	hsa-miR-17-3p	hsa-miR-92a				-0.542457	2.269426e-9	3.932234e-5	1.456383e-6
28	hsa-miR-17-3p	hsa-miR-491-5p				-0.541681	2.416273e-9	4.186676e-5	1.495242e-6
29	hsa-miR-17-3p	hsa-miR-363	MI0000764			0.539412	2.899653e-9	5.024229e-5	1.732493e-6
30	hsa-miR-17-3p	hsa-miR-96	MI0000098			0.538872	3.027905e-9	5.246452e-5	1.748817e-6
31	hsa-miR-17-3p	hsa-miR-19a	MI0000073			0.537763	3.308055e-9	5.731867e-5	1.848989e-6
32	hsa-miR-17-3p	hsa-miR-142-3p				0.529700	6.236309e-9	1.080565e-4	3.376766e-6
33	hsa-miR-17-3p	hsa-miR-20a-3p				0.529564	6.302516e-9	1.092037e-4	3.309203e-6
34	hsa-miR-17-3p	hsa-miR-636	MI0003651			-0.529534	6.317334e-9	1.094605e-4	3.219425e-6
35	hsa-miR-17-3p	hsa-miR-486-5p				-0.527317	7.497890e-9	1.299159e-4	3.711884e-6
36	hsa-miR-17-3p	hsa-miR-190	MI0000486			0.524799	9.095126e-9	1.575913e-4	4.377535e-6
37	hsa-miR-17-3p	hsa-miR-16-1-3p				0.521401	1.177463e-8	2.040191e-4	5.514029e-6
38	hsa-miR-17-3p	hsa-miR-9				0.515392	1.845831e-8	3.198271e-4	8.416503e-6
39	hsa-miR-17-3p	hsa-miR-766	MI0003836			-0.514792	1.929737e-8	3.343656e-4	8.573476e-6
40	hsa-miR-17-3p	hsa-miR-130a	MI0000448			0.510194	2.704615e-8	4.686287e-4	1.171572e-5
41	hsa-miR-17-3p	hsa-miR-144-5p				0.502418	4.733286e-8	8.201364e-4	2.000333e-5
42	hsa-miR-17-3p	hsa-miR-195	MI0000489			0.500535	5.409048e-8	9.372257e-4	2.231490e-5
43	hsa-miR-17-3p	hsa-miR-19b-1-5p				0.499519	5.810760e-8	1.006830e-3	2.341466e-5
44	hsa-miR-17-3p	hsa-miR-374b	MI0005566			0.497521	6.685590e-8	1.158412e-3	2.632755e-5
45	hsa-miR-17-3p	hsa-miR-139-3p				-0.480221	2.170921e-7	3.761554e-3	8.359009e-5
46	hsa-miR-17-3p	hsa-miR-148a	MI0000253			0.480013	2.201057e-7	3.813771e-3	8.290806e-5
47	hsa-miR-17-3p	hsa-miR-28-3p				-0.479112	2.336120e-7	4.047794e-3	8.612329e-5
48	hsa-miR-17-3p	hsa-miR-27a	MI0000085			-0.478707	2.399232e-7	4.157149e-3	8.660728e-5
49	hsa-miR-17-3p	hsa-miR-151-3p				-0.475019	3.055085e-7	5.293545e-3	1.080315e-4
50	hsa-miR-17-3p	8149399	NM_152271	LONRF1		0.473112	3.457804e-7	5.991337e-3	1.198267e-4

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.