Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
92	hsa-miR-191	MI0000465			Homo sapiens miR-191 stem-loop

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	hsa-miR-191	hsa-miR-18a	MI0000072			-0.789610	1.404247e-23	2.433139e-19	2.433139e-19
2	hsa-miR-191	hsa-miR-20a	MI0000076			-0.773998	3.637890e-22	6.303372e-18	3.151686e-18
3	hsa-miR-191	hsa-miR-18b	MI0001518			-0.770567	7.185543e-22	1.245039e-17	4.150130e-18
4	hsa-miR-191	hsa-miR-93	MI0000095			-0.755908	1.158143e-20	2.006715e-16	5.016788e-17
5	hsa-miR-191	hsa-miR-342-3p				0.749024	3.997703e-20	6.926819e-16	1.385364e-16
6	hsa-miR-191	hsa-miR-21	MI0000077			-0.742156	1.322847e-19	2.292097e-15	3.820162e-16
7	hsa-miR-191	hsa-miR-101				-0.712059	1.653223e-17	2.864539e-13	4.092198e-14
8	hsa-miR-191	hsa-miR-629-3p				0.701617	7.663947e-17	1.327932e-12	1.659915e-13
9	hsa-miR-191	hsa-miR-20b	MI0001519			-0.685114	7.594028e-16	1.315817e-11	1.462019e-12
10	hsa-miR-191	hsa-miR-103				-0.659964	1.898210e-14	3.289029e-10	3.289029e-11
11	hsa-miR-191	hsa-miR-199a-3p				-0.640799	1.808236e-13	3.133131e-9	2.848301e-10
12	hsa-miR-191	hsa-miR-150	MI0000479			0.639880	2.006555e-13	3.476757e-9	2.897298e-10
13	hsa-miR-191	hsa-miR-301a	MI0000745			-0.638572	2.325625e-13	4.029610e-9	3.099700e-10
14	hsa-miR-191	hsa-miR-17	MI0000071			-0.637448	2.638698e-13	4.572072e-9	3.265765e-10
15	hsa-miR-191	hsa-miR-130a	MI0000448			-0.620715	1.628658e-12	2.821976e-8	1.881317e-9
16	hsa-miR-191	hsa-miR-579	MI0003586			-0.616355	2.571237e-12	4.455182e-8	2.784489e-9
17	hsa-miR-191	hsa-miR-29b-2-5p				-0.614685	3.056805e-12	5.296526e-8	3.115603e-9
18	hsa-miR-191	hsa-miR-26b	MI0000084			-0.610941	4.489293e-12	7.778599e-8	4.321444e-9
19	hsa-miR-191	hsa-miR-126-5p				-0.602114	1.089120e-11	1.887118e-7	9.932198e-9
20	hsa-miR-191	hsa-miR-106a	MI0000113			-0.600748	1.246219e-11	2.159323e-7	1.079662e-8
21	hsa-miR-191	hsa-miR-148a	MI0000253			-0.600274	1.305630e-11	2.262266e-7	1.077269e-8
22	hsa-miR-191	hsa-miR-574-3p				0.596457	1.895015e-11	3.283492e-7	1.492496e-8
23	hsa-miR-191	hsa-miR-125a-5p				0.595306	2.118279e-11	3.670342e-7	1.595801e-8
24	hsa-miR-191	hsa-miR-27b	MI0000440			-0.593846	2.438240e-11	4.224739e-7	1.760308e-8
25	hsa-miR-191	hsa-miR-19a	MI0000073			-0.588826	3.933112e-11	6.814903e-7	2.725961e-8
26	hsa-miR-191	hsa-miR-636	MI0003651			0.588366	4.107649e-11	7.117324e-7	2.737432e-8
27	hsa-miR-191	hsa-miR-132	MI0000449			0.587579	4.423757e-11	7.665044e-7	2.838905e-8
28	hsa-miR-191	hsa-miR-891a	MI0005524			0.587332	4.527536e-11	7.844862e-7	2.801736e-8
29	hsa-miR-191	hsa-miR-625-3p				0.582632	7.016942e-11	1.215825e-6	4.192502e-8
30	hsa-miR-191	hsa-miR-17-3p				-0.577306	1.143269e-10	1.980943e-6	6.603143e-8
31	hsa-miR-191	hsa-miR-212	MI0000288			0.571518	1.924249e-10	3.334147e-6	1.075531e-7
32	hsa-miR-191	hsa-miR-135a				-0.570491	2.108295e-10	3.653042e-6	1.141576e-7
33	hsa-miR-191	hsa-miR-425	MI0001448			0.565501	3.271121e-10	5.667871e-6	1.717537e-7
34	hsa-miR-191	hsa-miR-484	MI0002468			0.564615	3.533831e-10	6.123069e-6	1.800903e-7
35	hsa-miR-191	hsa-miR-197	MI0000239			0.564129	3.686391e-10	6.387410e-6	1.824974e-7
36	hsa-miR-191	hsa-miR-15a-3p				-0.558545	5.962466e-10	1.033116e-5	2.869768e-7
37	hsa-miR-191	hsa-miR-186	MI0000483			0.548040	1.438608e-9	2.492677e-5	6.736965e-7
38	hsa-miR-191	hsa-miR-93-3p				0.543324	2.115470e-9	3.665475e-5	9.645988e-7
39	hsa-miR-191	hsa-miR-339-3p				0.541395	2.472534e-9	4.284159e-5	1.098502e-6
40	hsa-miR-191	hsa-miR-454-5p				0.536462	3.668531e-9	6.356464e-5	1.589116e-6
41	hsa-miR-191	hsa-miR-486-5p				0.535852	3.850381e-9	6.671555e-5	1.627209e-6
42	hsa-miR-191	hsa-miR-106b	MI0000734			-0.533880	4.498765e-9	7.795009e-5	1.855955e-6
43	hsa-miR-191	hsa-miR-144-5p				-0.530336	5.935852e-9	1.028505e-4	2.391872e-6
44	hsa-miR-191	hsa-miR-15a	MI0000069			-0.528552	6.816386e-9	1.181075e-4	2.684262e-6
45	hsa-miR-191	hsa-miR-590-5p				-0.525544	8.591521e-9	1.488653e-4	3.308117e-6
46	hsa-miR-191	hsa-miR-935	MI0005757			0.515964	1.769270e-8	3.065613e-4	6.664377e-6
47	hsa-miR-191	hsa-miR-140-5p				-0.515547	1.824837e-8	3.161895e-4	6.727436e-6
48	hsa-miR-191	SNORD48				0.514435	1.981387e-8	3.433149e-4	7.152394e-6
49	hsa-miR-191	hsa-miR-106b-3p				-0.508376	3.086614e-8	5.348176e-4	1.091464e-5
50	hsa-miR-191	hsa-miR-142-3p				-0.504206	4.166776e-8	7.219773e-4	1.443955e-5

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.