[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 7898.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7898	8026298	ENST00000411089

Fetching correlation data, please wait...
Getting list of correlations for id 7898.
Getting list of p-values for id 7898.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.091 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8026298	8014035	ENST00000411089		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8026298	8002939	ENST00000362429		0.586468	4.910313e-11	8.508100e-7	4.254050e-7
3	8026298	8107090			0.583443	6.509734e-11	1.127942e-6	3.759805e-7
4	8026298	7945645	NM_001005922	KRTAP5-1	0.561385	4.674004e-10	8.098646e-6	2.024662e-6
5	8026298	7995336			0.552780	9.704231e-10	1.681452e-5	3.362904e-6
6	8026298	8073296	NM_005297	MCHR1	0.546266	1.664339e-9	2.883801e-5	4.806334e-6
7	8026298	8143385	ENST00000365602		0.537845	3.286614e-9	5.694716e-5	8.135309e-6
8	8026298	8026212	hsa-mir-181c		0.533523	4.626731e-9	8.016736e-5	1.002092e-5
9	8026298	8175724	NM_005367	MAGEA12	0.526325	8.092169e-9	1.402130e-4	1.557922e-5
10	8026298	8002937			0.522714	1.066032e-8	1.847113e-4	1.847113e-5
11	8026298	8065254	ENST00000424633		-0.522361	1.094952e-8	1.897224e-4	1.724749e-5
12	8026298	8022608			0.521466	1.171634e-8	2.030090e-4	1.691741e-5
13	8026298	7927277	NM_014696	GPRIN2	0.521203	1.195123e-8	2.070790e-4	1.592915e-5
14	8026298	7977371	NM_001100913	PACS2	0.520814	1.230782e-8	2.132575e-4	1.523268e-5
15	8026298	7987097	hsa-mir-211		0.519752	1.333195e-8	2.310028e-4	1.540019e-5
16	8026298	8100964			0.519341	1.375023e-8	2.382502e-4	1.489064e-5
17	8026298	8007641	ENST00000434166		0.516111	1.750041e-8	3.032295e-4	1.783703e-5
18	8026298	8028158	ENST00000262637		0.513308	2.153009e-8	3.730518e-4	2.072510e-5
19	8026298	7937700	NM_001001480	KRTAP5-5	0.511447	2.468015e-8	4.276330e-4	2.250700e-5
20	8026298	8067551	ENST00000415185		0.511347	2.486297e-8	4.308007e-4	2.154004e-5
21	8026298	8139907	ENST00000410496		0.511015	2.547322e-8	4.413745e-4	2.101783e-5
22	8026298	7897286	AY358179	LOC100130071	0.510783	2.590825e-8	4.489123e-4	2.040510e-5
23	8026298	8079167	NM_001145030	C3orf77	0.510395	2.665134e-8	4.617878e-4	2.007773e-5
24	8026298	7932881	AK094743	LOC390414	0.509912	2.760633e-8	4.783349e-4	1.993062e-5
25	8026298	7950490	hsa-mir-326		0.509887	2.765729e-8	4.792179e-4	1.916872e-5
26	8026298	7977567	BC146951	KLHL33	0.508273	3.109528e-8	5.387879e-4	2.072261e-5
27	8026298	8033352	NM_144614	MBD3L2	0.506767	3.467041e-8	6.007341e-4	2.224941e-5
28	8026298	7981266	NM_001144995	CCDC85C	0.505418	3.820449e-8	6.619693e-4	2.364176e-5
29	8026298	8054020	BC038583	FAM178B	0.505167	3.889725e-8	6.739727e-4	2.324044e-5
30	8026298	7995348			0.502570	4.682287e-8	8.112998e-4	2.704333e-5
31	8026298	8016600	NM_170685	TAC4	0.500126	5.567446e-8	9.646713e-4	3.111843e-5
32	8026298	8001014	NM_173502	PRSS36	0.499526	5.808047e-8	1.006360e-3	3.144876e-5
33	8026298	8075705			0.499494	5.820889e-8	1.008585e-3	3.056319e-5
34	8026298	7913110	BC034589	KIAA0090	-0.498418	6.278513e-8	1.087878e-3	3.199641e-5
35	8026298	7972442	ENST00000411037		0.496587	7.136626e-8	1.236563e-3	3.533038e-5
36	8026298	7998872	NR_026864	PRSS30P	0.494967	7.988026e-8	1.384085e-3	3.844681e-5
37	8026298	8170412	NM_005364	MAGEA8	0.493703	8.718955e-8	1.510733e-3	4.083063e-5
38	8026298	8136863	NM_153345	TMEM139	0.490762	1.067435e-7	1.849545e-3	4.867223e-5
39	8026298	8113035	ENST00000384400		0.490541	1.083758e-7	1.877827e-3	4.814942e-5
40	8026298	8104592	NM_012304	FBXL7	0.490300	1.101735e-7	1.908977e-3	4.772442e-5
41	8026298	8097936			0.490237	1.106480e-7	1.917198e-3	4.676092e-5
42	8026298	8034837	NM_006145	DNAJB1	-0.489268	1.182133e-7	2.048282e-3	4.876863e-5
43	8026298	7998629	ENST00000431136		0.488122	1.278058e-7	2.214491e-3	5.149979e-5
44	8026298	8174389	NM_033641	COL4A6	0.487771	1.308825e-7	2.267802e-3	5.154095e-5
45	8026298	7899560	ENST00000383977		0.487639	1.320593e-7	2.288192e-3	5.084871e-5
46	8026298	8066482	NM_145652	WFDC5	0.487530	1.330437e-7	2.305248e-3	5.011409e-5
47	8026298	8020449			0.484766	1.603171e-7	2.777814e-3	5.910243e-5
48	8026298	7933707	NM_032997	ZWINT	0.484756	1.604219e-7	2.779630e-3	5.790895e-5
49	8026298	7994675	NM_181718	ASPHD1	0.484612	1.619859e-7	2.806729e-3	5.728018e-5
50	8026298	7995352			0.484082	1.678461e-7	2.908270e-3	5.816540e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation