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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 4 variables:
id Label1 AccNum GeneSym Info Gene Name
2079 8033352 NM_144614 MBD3L2 link to infopage methyl-CpG binding domain protein 3-like 2
2596 8033356 NM_144614 MBD3L2 link to infopage methyl-CpG binding domain protein 3-like 2
2597 8033359 NM_144614 MBD3L2 link to infopage methyl-CpG binding domain protein 3-like 2
3136 8025126 NM_144614 MBD3L2 link to infopage methyl-CpG binding domain protein 3-like 2

Fetching correlation data, please wait...
Getting list of correlations for id 2079.
Getting list of p-values for id 2079.
1 of 4 done.
Getting list of correlations for id 2596.
Getting list of p-values for id 2596.
2 of 4 done.
Getting list of correlations for id 2597.
Getting list of p-values for id 2597.
3 of 4 done.
Getting list of correlations for id 3136.
Getting list of p-values for id 3136.
4 of 4 done.
Calculating corrections for multiple testing (n=69308), please wait...
Done; whole program took 0.427 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8033359 8033356 NM_144614 MBD3L2 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8033356 8033359 NM_144614 MBD3L2 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8033356 8025126 NM_144614 MBD3L2 link to infopage 0.964940 1.188817e-61 8.239450e-57 2.746483e-57
4 8025126 8033356 NM_144614 MBD3L2 link to infopage 0.964940 1.188817e-61 8.239450e-57 2.059862e-57
5 8025126 8033359 NM_144614 MBD3L2 link to infopage 0.964940 1.188817e-61 8.239450e-57 1.647890e-57
6 8033359 8025126 NM_144614 MBD3L2 link to infopage 0.964940 1.188817e-61 8.239450e-57 1.373242e-57
7 8025126 7898616 NM_022819 PLA2G2F link to infopage 0.764458 2.345271e-21 1.625461e-16 2.322087e-17
8 8025126 7977418 NM_001134875 C14orf80 link to infopage 0.756107 1.116892e-20 7.740954e-16 9.676193e-17
9 8025126 7944882 NM_022370 ROBO3 link to infopage 0.756089 1.120551e-20 7.766311e-16 8.629235e-17
10 8025126 8033352 NM_144614 MBD3L2 link to infopage 0.753527 1.786010e-20 1.237848e-15 1.237848e-16
11 8033352 8025126 NM_144614 MBD3L2 link to infopage 0.753527 1.786010e-20 1.237848e-15 1.125316e-16
12 8025126 8067506 BC137326 C20orf151 link to infopage 0.748893 4.091750e-20 2.835910e-15 2.363259e-16
13 8025126 8038280 NM_000737 CGB link to infopage 0.748282 4.557923e-20 3.159006e-15 2.430004e-16
14 8025126 8131056 NM_017781 CYP2W1 link to infopage 0.739731 2.000517e-19 1.386518e-14 9.903703e-16
15 8025126 7992379 NM_001010865 EME2 link to infopage 0.739687 2.015508e-19 1.396909e-14 9.312724e-16
16 8025126 7912706 NM_004431 EPHA2 link to infopage 0.734972 4.444378e-19 3.080309e-14 1.925193e-15
17 8025126 7995332 link to infopage 0.734310 4.959835e-19 3.437562e-14 2.022095e-15
18 8025126 8032770 NM_016539 SIRT6 link to infopage 0.732902 6.256584e-19 4.336313e-14 2.409063e-15
19 8025126 8007537 NM_145273 CD300LG link to infopage 0.731474 7.906517e-19 5.479848e-14 2.884131e-15
20 8025126 7996027 NM_002996 CX3CL1 link to infopage 0.730529 9.223376e-19 6.392538e-14 3.196269e-15
21 8025126 8125568 NM_080680 COL11A2 link to infopage 0.730522 9.233490e-19 6.399547e-14 3.047404e-15
22 8025126 7927383 NM_153034 ZNF488 link to infopage 0.729755 1.045795e-18 7.248194e-14 3.294633e-15
23 8033356 7912706 NM_004431 EPHA2 link to infopage 0.729582 1.075640e-18 7.455048e-14 3.241325e-15
24 8033359 7912706 NM_004431 EPHA2 link to infopage 0.729582 1.075640e-18 7.455048e-14 3.106270e-15
25 8025126 7906307 NM_018240 KIRREL link to infopage 0.729557 1.079947e-18 7.484898e-14 2.993959e-15
26 8025126 8174389 NM_033641 COL4A6 link to infopage 0.729499 1.090057e-18 7.554967e-14 2.905756e-15
27 8033356 7977418 NM_001134875 C14orf80 link to infopage 0.729307 1.124574e-18 7.794197e-14 2.886740e-15
28 8033359 7977418 NM_001134875 C14orf80 link to infopage 0.729307 1.124574e-18 7.794197e-14 2.783642e-15
29 8025126 7936762 NM_001001976 ATE1 link to infopage -0.728809 1.218750e-18 8.446909e-14 2.912727e-15
30 8025126 8153101 NM_152888 COL22A1 link to infopage 0.727994 1.389804e-18 9.632454e-14 3.210818e-15
31 8025126 8125383 NM_004557 NOTCH4 link to infopage 0.727603 1.479945e-18 1.025720e-13 3.308775e-15
32 8033356 8170753 NM_014370 SRPK3 link to infopage 0.727565 1.489123e-18 1.032081e-13 3.225254e-15
33 8033359 8170753 NM_014370 SRPK3 link to infopage 0.727565 1.489123e-18 1.032081e-13 3.127519e-15
34 8025126 7927367 NM_001040084 ANXA8 link to infopage 0.726789 1.686179e-18 1.168657e-13 3.437227e-15
35 8033359 7944882 NM_022370 ROBO3 link to infopage 0.726585 1.742104e-18 1.207418e-13 3.449765e-15
36 8033356 7944882 NM_022370 ROBO3 link to infopage 0.726585 1.742104e-18 1.207418e-13 3.353938e-15
37 8025126 8046922 NM_000090 COL3A1 link to infopage 0.726484 1.770509e-18 1.227104e-13 3.316499e-15
38 8025126 8101000 ENST00000437185 link to infopage 0.726043 1.899781e-18 1.316700e-13 3.465000e-15
39 8025126 8070482 NR_027272 C21orf129 link to infopage 0.724852 2.295977e-18 1.591295e-13 4.080245e-15
40 8033352 8033359 NM_144614 MBD3L2 link to infopage 0.724705 2.350070e-18 1.628786e-13 4.071966e-15
41 8033352 8033356 NM_144614 MBD3L2 link to infopage 0.724705 2.350070e-18 1.628786e-13 3.972650e-15
42 8033359 8033352 NM_144614 MBD3L2 link to infopage 0.724705 2.350070e-18 1.628786e-13 3.878063e-15
43 8033356 8033352 NM_144614 MBD3L2 link to infopage 0.724705 2.350070e-18 1.628786e-13 3.787875e-15
44 8033359 8038362 NM_178449 PTH2 link to infopage 0.724344 2.488441e-18 1.724688e-13 3.919746e-15
45 8033356 8038362 NM_178449 PTH2 link to infopage 0.724344 2.488441e-18 1.724688e-13 3.832641e-15
46 8025126 8114550 NM_004883 NRG2 link to infopage 0.724190 2.549664e-18 1.767121e-13 3.841567e-15
47 8033356 8024655 NM_001135580 C19orf71 link to infopage 0.723574 2.810383e-18 1.947820e-13 4.144298e-15
48 8033359 8024655 NM_001135580 C19orf71 link to infopage 0.723574 2.810383e-18 1.947820e-13 4.057958e-15
49 8025126 8001014 NM_173502 PRSS36 link to infopage 0.723333 2.919046e-18 2.023132e-13 4.128841e-15
50 8025126 7997801 NM_013278 IL17C link to infopage 0.723027 3.063112e-18 2.122981e-13 4.245963e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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