[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 8443.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
8443	7905085	NM_001005464	HIST2H3A		histone cluster 2, H3a

Fetching correlation data, please wait...
Getting list of correlations for id 8443.
Getting list of p-values for id 8443.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.083 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7905085	7919614	NM_001005464	HIST2H3A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7905085	7919612	NM_001123375	HIST2H3D	0.790015	1.285911e-23	2.228099e-19	1.114049e-19
3	7905085	7919589	NM_001123375	HIST2H3D	0.770140	7.813738e-22	1.353886e-17	4.512955e-18
4	7905085	8032761	NM_030662	MAP2K2	0.570117	2.179437e-10	3.776310e-6	9.440775e-7
5	7905085	7976443	NM_001130080	IFI27	0.548460	1.389595e-9	2.407751e-5	4.815503e-6
6	7905085	8026895	NM_138442	CCDC124	0.522111	1.115890e-8	1.933502e-4	3.222504e-5
7	7905085	8019018	NM_003655	CBX4	0.518312	1.485203e-8	2.573411e-4	3.676301e-5
8	7905085	8103023	BC035666		0.514193	2.017112e-8	3.495051e-4	4.368813e-5
9	7905085	8002102	AF090894		-0.506095	3.638935e-8	6.305182e-4	7.005758e-5
10	7905085	7949046	NM_001033678	TRPT1	0.500397	5.461823e-8	9.463700e-4	9.463700e-5
11	7905085	8023914	NM_025078	PQLC1	0.498759	6.129834e-8	1.062116e-3	9.655603e-5
12	7905085	7924842	BC002843	C1orf35	0.498695	6.157533e-8	1.066916e-3	8.890964e-5
13	7905085	7986246	ENST00000380748		0.495392	7.756035e-8	1.343888e-3	1.033760e-4
14	7905085	7906954	NM_002585	PBX1	0.493483	8.852653e-8	1.533899e-3	1.095642e-4
15	7905085	8039805	NM_003969	UBE2M	0.490342	1.098587e-7	1.903522e-3	1.269015e-4
16	7905085	8117339	NM_003531	HIST1H3C	0.488194	1.271826e-7	2.203692e-3	1.377308e-4
17	7905085	8073705	NM_181333	PRR5	0.487761	1.309717e-7	2.269346e-3	1.334909e-4
18	7905085	8072870	NM_020315	PDXP	0.483378	1.759524e-7	3.048727e-3	1.693737e-4
19	7905085	8112335	ENST00000364176		-0.482222	1.900653e-7	3.293261e-3	1.733295e-4
20	7905085	8148737	NM_032272	MAF1	0.481442	2.001991e-7	3.468849e-3	1.734425e-4
21	7905085	8073623	NM_001044370	MPPED1	0.480583	2.119455e-7	3.672380e-3	1.748752e-4
22	7905085	8021542	NM_017742	ZCCHC2	0.480003	2.202528e-7	3.816321e-3	1.734691e-4
23	7905085	7986092	NM_002569	FURIN	0.475893	2.885844e-7	5.000302e-3	2.174044e-4
24	7905085	7959946	NM_016155	MMP17	0.474835	3.091916e-7	5.357362e-3	2.232234e-4
25	7905085	8035297	NM_031310	PLVAP	0.474765	3.106074e-7	5.381894e-3	2.152758e-4
26	7905085	7910257	NM_020435	GJC2	0.473618	3.346214e-7	5.797985e-3	2.229994e-4
27	7905085	8117580	NM_003509	HIST1H2AI	0.472599	3.574400e-7	6.193363e-3	2.293838e-4
28	7905085	8025296	NM_174894	TRAPPC5	0.471450	3.849587e-7	6.670179e-3	2.382207e-4
29	7905085	7997158	NM_001017967	MARVELD3	0.469955	4.237695e-7	7.342654e-3	2.531950e-4
30	7905085	8036004	NM_004364	CEBPA	0.466817	5.176456e-7	8.969246e-3	2.989749e-4
31	7905085	8024637	NM_001136198	FZR1	0.466741	5.201479e-7	9.012603e-3	2.907291e-4
32	7905085	8029671	NM_177417	KLC3	0.465860	5.500170e-7	9.530145e-3	2.978170e-4
33	7905085	8034075	NM_001800	CDKN2D	0.465327	5.688644e-7	9.856713e-3	2.986883e-4
34	7905085	8000217	NM_015092	SMG1	-0.464583	5.961996e-7	1.033035e-2	3.038338e-4
35	7905085	7993017			0.463119	6.536776e-7	1.132627e-2	3.236078e-4
36	7905085	7935865	NM_013274	POLL	0.460887	7.515518e-7	1.302214e-2	3.617261e-4
37	7905085	7913385	NM_001145657	RAP1GAP	0.460345	7.772918e-7	1.346813e-2	3.640036e-4
38	7905085	8037853	NM_017854	TMEM160	0.459922	7.980253e-7	1.382738e-2	3.638785e-4
39	7905085	8164535	NM_000755	CRAT	0.459481	8.201307e-7	1.421040e-2	3.643694e-4
40	7905085	7976515	NM_016417	GLRX5	0.457903	9.042382e-7	1.566774e-2	3.916934e-4
41	7905085	8115918	NM_007097	CLTB	0.457851	9.071049e-7	1.571741e-2	3.833514e-4
42	7905085	8036473	NM_033256	PPP1R14A	0.456624	9.783130e-7	1.695123e-2	4.036007e-4
43	7905085	8109226	NM_001804	CDX1	0.455838	1.026662e-6	1.778897e-2	4.136971e-4
44	7905085	7902265	ENST00000410470		0.454929	1.085371e-6	1.880622e-2	4.274141e-4
45	7905085	7906469	NM_017823	DUSP23	0.454896	1.087544e-6	1.884388e-2	4.187528e-4
46	7905085	8024864	NM_001001520	HDGFRP2	0.453777	1.164370e-6	2.017504e-2	4.385879e-4
47	7905085	7942697	NM_004055	CAPN5	0.453652	1.173290e-6	2.032960e-2	4.325446e-4
48	7905085	7924166	NM_018664	BATF3	0.453042	1.217641e-6	2.109806e-2	4.395429e-4
49	7905085	8024204	NM_000455	STK11	0.453001	1.220648e-6	2.115016e-2	4.316360e-4
50	7905085	8165690	NC_001807		-0.452366	1.268569e-6	2.198049e-2	4.396099e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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