[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 8728.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
8728	8112538	NM_001515	GTF2H2		general transcription factor IIH, polypeptide 2, 44kDa

Fetching correlation data, please wait...
Getting list of correlations for id 8728.
Getting list of p-values for id 8728.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.110 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8112538	8177507	NM_001515	GTF2H2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8112538	8105918	NM_001515	GTF2H2	0.996505	7.031683e-113	1.218380e-108	6.091898e-109
3	8112538	8177674	NM_001515	GTF2H2	0.994047	5.417563e-101	9.387011e-97	3.129004e-97
4	8112538	8105970	NM_001515	GTF2H2	0.992433	1.201677e-95	2.082146e-91	5.205365e-92
5	8112538	7934812	NM_015045	WAPAL	0.747755	5.001278e-20	8.665715e-16	1.733143e-16
6	8112538	7935707	NM_001278	CHUK	0.733081	6.074919e-19	1.052601e-14	1.754335e-15
7	8112538	7967304	NM_198261	RSRC2	0.730674	9.007819e-19	1.560785e-14	2.229693e-15
8	8112538	7922912	NM_003292	TPR	0.726883	1.661174e-18	2.878317e-14	3.597896e-15
9	8112538	8006112	NM_032141	CCDC55	0.725423	2.096688e-18	3.632932e-14	4.036591e-15
10	8112538	7978449	NM_015382	HECTD1	0.723266	2.950309e-18	5.112001e-14	5.112001e-15
11	8112538	8162086	NM_015239	AGTPBP1	0.722850	3.149953e-18	5.457923e-14	4.961748e-15
12	8112538	8105504	NM_152789	FAM133B	0.720134	4.815893e-18	8.344497e-14	6.953748e-15
13	8112538	8084146	NM_001013439	FXR1	0.719844	5.037660e-18	8.728754e-14	6.714426e-15
14	8112538	8173766	NM_153252	BRWD3	0.718047	6.651777e-18	1.152553e-13	8.232525e-15
15	8112538	8095163	NM_001024924	EXOC1	0.716967	7.852719e-18	1.360641e-13	9.070937e-15
16	8112538	8107356	NM_152624	DCP2	0.716846	7.998573e-18	1.385913e-13	8.661954e-15
17	8112538	7913415	NM_032236	USP48	0.715785	9.407964e-18	1.630118e-13	9.588929e-15
18	8112538	7903519	NM_018061	PRPF38B	0.715740	9.472804e-18	1.641353e-13	9.118627e-15
19	8112538	8008834	NM_004859	CLTC	0.714636	1.120548e-17	1.941573e-13	1.021880e-14
20	8112538	8090898	NM_005862	STAG1	0.713090	1.415710e-17	2.453001e-13	1.226501e-14
21	8112538	8048980	NM_016289	CAB39	0.711274	1.859866e-17	3.222589e-13	1.534566e-14
22	8112538	8134122	NM_005751	AKAP9	0.709379	2.466820e-17	4.274258e-13	1.942845e-14
23	8112538	8084016	NM_006218	PIK3CA	0.708363	2.867468e-17	4.968461e-13	2.160200e-14
24	8112538	8066009	NM_184234	RBM39	0.708240	2.920017e-17	5.059513e-13	2.108131e-14
25	8112538	8091009	NM_006219	PIK3CB	0.706596	3.719413e-17	6.444627e-13	2.577851e-14
26	8112538	7922889	NM_006469	IVNS1ABP	0.705954	4.086206e-17	7.080170e-13	2.723142e-14
27	8112538	8146717	NM_013257	SGK3	0.705043	4.667556e-17	8.087474e-13	2.995361e-14
28	8112538	7971422	NM_015070	ZC3H13	0.704363	5.153036e-17	8.928665e-13	3.188809e-14
29	8112538	7942839	NM_015885	PCF11	0.704242	5.244556e-17	9.087243e-13	3.133532e-14
30	8112538	8114814	NM_000176	NR3C1	0.704124	5.335702e-17	9.245171e-13	3.081724e-14
31	8112538	7989253	NM_024755	SLTM	0.703600	5.756391e-17	9.974098e-13	3.217451e-14
32	8112538	8055978	NM_152789	FAM133B	0.703438	5.893214e-17	1.021117e-12	3.190991e-14
33	8112538	8146637	NM_152758	YTHDF3	0.703053	6.230897e-17	1.079628e-12	3.271599e-14
34	8112538	7967420	NM_018183	SBNO1	0.703043	6.240165e-17	1.081233e-12	3.180098e-14
35	8112538	7932041	NM_080599	UPF2	0.702535	6.715230e-17	1.163548e-12	3.324422e-14
36	8112538	8157700	NM_012197	RABGAP1	0.702522	6.727141e-17	1.165612e-12	3.237811e-14
37	8112538	8166500	NM_003410	ZFX	0.702070	7.180120e-17	1.244099e-12	3.362431e-14
38	8112538	7978866	NM_004713	SDCCAG1	0.701279	8.045399e-17	1.394026e-12	3.668490e-14
39	8112538	8131975	NM_006024	TAX1BP1	0.701197	8.140477e-17	1.410500e-12	3.616668e-14
40	8112538	7900395	NM_012421	RLF	0.700870	8.530639e-17	1.478104e-12	3.695259e-14
41	8112538	7985166	NM_004136	IREB2	0.700778	8.644046e-17	1.497754e-12	3.653058e-14
42	8112538	8140942	NM_001040057	FAM133B	0.700631	8.827739e-17	1.529582e-12	3.641863e-14
43	8112538	7979044	NM_020921	NIN	0.700175	9.422865e-17	1.632700e-12	3.796976e-14
44	8112538	8045455	NM_014607	UBXN4	0.700037	9.610901e-17	1.665281e-12	3.784729e-14
45	8112538	7930470	NM_007373	SHOC2	0.699922	9.769725e-17	1.692800e-12	3.761778e-14
46	8112538	8173673	NM_000489	ATRX	0.699889	9.814737e-17	1.700599e-12	3.696955e-14
47	8112538	7903988	NM_001010935	RAP1A	0.699208	1.081557e-16	1.874014e-12	3.987263e-14
48	8112538	8042601	NM_014497	ZNF638	0.698979	1.117318e-16	1.935978e-12	4.033286e-14
49	8112538	7913824	NM_020317	C1orf63	0.698866	1.135379e-16	1.967272e-12	4.014840e-14
50	8112538	8022441	NM_005406	ROCK1	0.698754	1.153595e-16	1.998835e-12	3.997670e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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