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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 9827.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
9827 7991159 NR_027001 LOC388152 link to infopage hypothetical LOC388152

Fetching correlation data, please wait...
Getting list of correlations for id 9827.
Getting list of p-values for id 9827.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.115 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7991159 7991088 NR_027001 LOC388152 link to infopage 0.987299 4.052996e-84 7.022625e-80 7.022625e-80
2 7991159 7990902 NR_026811 LOC80154 link to infopage 0.955211 2.792366e-56 4.838332e-52 2.419166e-52
3 7991159 7990952 NR_026811 LOC80154 link to infopage 0.939500 9.942251e-50 1.722694e-45 5.742312e-46
4 7991159 7985431 NR_026811 LOC80154 link to infopage 0.937554 4.831626e-49 8.371759e-45 2.092940e-45
5 7991159 7991714 link to infopage 0.881361 2.548176e-35 4.415225e-31 8.830450e-32
6 7991159 8033825 NM_015719 COL5A3 link to infopage 0.819986 1.048285e-26 1.816363e-22 3.027272e-23
7 7991159 7985571 NR_026811 LOC80154 link to infopage 0.815940 2.950734e-26 5.112737e-22 7.303909e-23
8 7991159 8157383 NM_032888 COL27A1 link to infopage 0.798614 1.890870e-24 3.276310e-20 4.095387e-21
9 7991159 8040290 ENST00000364740 link to infopage 0.772803 4.617230e-22 8.000274e-18 8.889194e-19
10 7991159 7995336 link to infopage 0.765407 1.956219e-21 3.389540e-17 3.389540e-18
11 7991159 7932860 link to infopage 0.764979 2.123215e-21 3.678895e-17 3.344450e-18
12 7991159 8028325 NM_033520 C19orf33 link to infopage 0.751878 2.403901e-20 4.165240e-16 3.471033e-17
13 7991159 7995324 link to infopage 0.749916 3.412937e-20 5.913596e-16 4.548920e-17
14 7991159 8035646 NM_023002 HAPLN4 link to infopage 0.749513 3.665667e-20 6.351501e-16 4.536786e-17
15 7991159 8159808 NM_207305 FOXD4 link to infopage 0.749155 3.906338e-20 6.768513e-16 4.512342e-17
16 7991159 7945536 NM_016564 CEND1 link to infopage 0.744338 9.081946e-20 1.573629e-15 9.835180e-17
17 7991159 8104122 NM_033178 DUX4 link to infopage 0.744267 9.195072e-20 1.593230e-15 9.371942e-17
18 7991159 8165890 NM_001001888 VCX3B link to infopage 0.743001 1.144051e-19 1.982298e-15 1.101277e-16
19 7991159 8086985 NM_000094 COL7A1 link to infopage 0.742066 1.343564e-19 2.327993e-15 1.225259e-16
20 7991159 8044634 NM_012184 FOXD4L1 link to infopage 0.741063 1.594980e-19 2.763622e-15 1.381811e-16
21 7991159 8064031 NM_139317 BIRC7 link to infopage 0.740756 1.680483e-19 2.911773e-15 1.386559e-16
22 7991159 7992302 NM_020825 CRAMP1L link to infopage 0.736621 3.377312e-19 5.851869e-15 2.659941e-16
23 7991159 8065603 NR_002781 TSPYL3 link to infopage 0.736480 3.457391e-19 5.990621e-15 2.604618e-16
24 7991159 8042532 NM_012476 VAX2 link to infopage 0.735228 4.259643e-19 7.380684e-15 3.075285e-16
25 7991159 7952752 NM_007037 ADAMTS8 link to infopage 0.734076 5.155227e-19 8.932461e-15 3.572985e-16
26 7991159 8039759 NM_198458 ZNF497 link to infopage 0.733213 5.944507e-19 1.030005e-14 3.961556e-16
27 7991159 8125568 NM_080680 COL11A2 link to infopage 0.733070 6.085777e-19 1.054483e-14 3.905491e-16
28 7991159 8073623 NM_001044370 MPPED1 link to infopage 0.731344 8.075961e-19 1.399322e-14 4.997578e-16
29 7991159 7949015 NM_001144936 C11orf95 link to infopage 0.730036 9.992914e-19 1.731472e-14 5.970594e-16
30 7991159 8007259 ENST00000225928 link to infopage 0.729342 1.118204e-18 1.937512e-14 6.458374e-16
31 7991159 8024655 NM_001135580 C19orf71 link to infopage 0.728956 1.190216e-18 2.062288e-14 6.652541e-16
32 7991159 8150433 NM_152568 NKX6-3 link to infopage 0.725777 1.981957e-18 3.434137e-14 1.073168e-15
33 7991159 8067242 ENST00000457363 link to infopage 0.725695 2.008037e-18 3.479326e-14 1.054341e-15
34 7991159 8144643 NM_002052 GATA4 link to infopage 0.725404 2.103171e-18 3.644165e-14 1.071813e-15
35 7991159 7991169 link to infopage 0.725112 2.203035e-18 3.817199e-14 1.090628e-15
36 7991159 7991104 link to infopage 0.725112 2.203035e-18 3.817199e-14 1.060333e-15
37 7991159 8165881 NM_013452 VCX link to infopage 0.724997 2.243588e-18 3.887465e-14 1.050666e-15
38 7991159 7897132 NM_022114 PRDM16 link to infopage 0.723596 2.800448e-18 4.852337e-14 1.276931e-15
39 7991159 7994961 NM_001330 CTF1 link to infopage 0.721162 4.103611e-18 7.110328e-14 1.823161e-15
40 7991159 7958942 NM_001144872 CCDC42B link to infopage 0.721141 4.117069e-18 7.133646e-14 1.783411e-15
41 7991159 8069269 NM_001848 COL6A1 link to infopage 0.719774 5.092889e-18 8.824449e-14 2.152305e-15
42 7991159 8064059 NM_020882 COL20A1 link to infopage 0.719762 5.102771e-18 8.841571e-14 2.105136e-15
43 7991159 7995342 link to infopage 0.719696 5.155098e-18 8.932238e-14 2.077265e-15
44 7991159 7925550 NM_001126 ADSS link to infopage -0.719695 5.155416e-18 8.932788e-14 2.030179e-15
45 7991159 8038093 NM_001080434 LMTK3 link to infopage 0.719650 5.191482e-18 8.995280e-14 1.998951e-15
46 7991159 7962703 NM_001844 COL2A1 link to infopage 0.719454 5.352032e-18 9.273465e-14 2.015971e-15
47 7991159 8116195 NM_173465 COL23A1 link to infopage 0.719194 5.571512e-18 9.653759e-14 2.053991e-15
48 7991159 7923621 NM_002256 KISS1 link to infopage 0.719074 5.676560e-18 9.835776e-14 2.049120e-15
49 7991159 8076747 AK123383 LOC642648 link to infopage 0.718814 5.909197e-18 1.023887e-13 2.089564e-15
50 7991159 7897119 AF425266 C1orf93 link to infopage 0.718390 6.308438e-18 1.093063e-13 2.186126e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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