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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6972 7918759 NM_005872 BCAS2 link to infopage breast carcinoma amplified sequence 2

Fetching correlation data, please wait...
Getting list of correlations for id 6972.
Getting list of p-values for id 6972.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.154 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7918759 7918813 NM_002524 NRAS link to infopage 0.747908 4.868764e-20 8.436108e-16 8.436108e-16
2 7918759 7914180 NM_014752 SPCS2 link to infopage 0.722754 3.197542e-18 5.540381e-14 2.770190e-14
3 7918759 7992302 NM_020825 CRAMP1L link to infopage -0.722731 3.209160e-18 5.560512e-14 1.853504e-14
4 7918759 8136631 NM_003143 SSBP1 link to infopage 0.719777 5.090418e-18 8.820167e-14 2.205042e-14
5 7918759 8064686 NM_025220 ADAM33 link to infopage -0.715634 9.626467e-18 1.667978e-13 3.335956e-14
6 7918759 8081348 NM_020357 PCNP link to infopage 0.715399 9.977285e-18 1.728764e-13 2.881274e-14
7 7918759 7950544 NM_004705 PRKRIR link to infopage 0.715157 1.035166e-17 1.793632e-13 2.562332e-14
8 7918759 8107691 NM_032177 PHAX link to infopage 0.714226 1.192413e-17 2.066094e-13 2.582617e-14
9 7918759 8122705 NM_005389 PCMT1 link to infopage 0.713995 1.234781e-17 2.139505e-13 2.377228e-14
10 7918759 8173629 NM_004299 ABCB7 link to infopage 0.713585 1.313839e-17 2.276488e-13 2.276488e-14
11 7918759 7942553 NM_014752 SPCS2 link to infopage 0.713026 1.429454e-17 2.476816e-13 2.251651e-14
12 7918759 8135250 NM_002803 PSMC2 link to infopage 0.711104 1.907726e-17 3.305518e-13 2.754598e-14
13 7918759 8063607 NM_020673 RAB22A link to infopage 0.707862 3.087246e-17 5.349271e-13 4.114824e-14
14 7918759 7927972 NM_004896 VPS26A link to infopage 0.706633 3.699508e-17 6.410137e-13 4.578669e-14
15 7918759 8114193 NM_001033503 SAR1B link to infopage 0.706572 3.732357e-17 6.467055e-13 4.311370e-14
16 7918759 7995776 NM_005954 MT3 link to infopage -0.704735 4.881762e-17 8.458629e-13 5.286643e-14
17 7918759 8142878 NM_139286 CDC26 link to infopage 0.704302 5.198958e-17 9.008234e-13 5.298961e-14
18 7918759 8111533 NM_001007527 LMBRD2 link to infopage 0.704091 5.360790e-17 9.288641e-13 5.160356e-14
19 7918759 7902634 NM_025065 RPF1 link to infopage 0.703824 5.573198e-17 9.656680e-13 5.082463e-14
20 7918759 7924351 NM_004446 EPRS link to infopage 0.702718 6.540352e-17 1.133247e-12 5.666234e-14
21 7918759 7946728 NM_148976 PSMA1 link to infopage 0.702418 6.829242e-17 1.183303e-12 5.634775e-14
22 7918759 8046604 NM_003659 AGPS link to infopage 0.702193 7.054070e-17 1.222259e-12 5.555721e-14
23 7918759 7947221 NM_018362 LIN7C link to infopage 0.702104 7.145294e-17 1.238065e-12 5.382892e-14
24 7918759 7905099 NM_007259 VPS45 link to infopage 0.700927 8.461378e-17 1.466103e-12 6.108763e-14
25 7918759 7938669 NM_014267 C11orf58 link to infopage 0.700667 8.782605e-17 1.521762e-12 6.087048e-14
26 7918759 8159624 BC052297 C9orf169 link to infopage -0.700403 9.120680e-17 1.580340e-12 6.078232e-14
27 7918759 7920027 NM_007185 CELF3 link to infopage -0.698979 1.117306e-16 1.935956e-12 7.170207e-14
28 7918759 7997230 NM_002811 PSMD7 link to infopage 0.698502 1.195735e-16 2.071850e-12 7.399465e-14
29 7918759 8046201 NM_003142 SSB link to infopage 0.698346 1.222495e-16 2.118217e-12 7.304196e-14
30 7918759 8084092 NM_002492 NDUFB5 link to infopage 0.698075 1.270279e-16 2.201013e-12 7.336711e-14
31 7918759 8104760 NM_152295 TARS link to infopage 0.697821 1.316691e-16 2.281431e-12 7.359454e-14
32 7918759 8125805 NM_000841 GRM4 link to infopage -0.697481 1.381579e-16 2.393862e-12 7.480820e-14
33 7918759 8041257 NM_017964 SLC30A6 link to infopage 0.697420 1.393487e-16 2.414495e-12 7.316650e-14
34 7918759 7933310 ENST00000319426 link to infopage -0.697207 1.436152e-16 2.488420e-12 7.318883e-14
35 7918759 8125383 NM_004557 NOTCH4 link to infopage -0.696366 1.616704e-16 2.801263e-12 8.003610e-14
36 7918759 8164452 NM_032799 ZDHHC12 link to infopage -0.695528 1.818526e-16 3.150960e-12 8.752667e-14
37 7918759 7954388 NM_016072 GOLT1B link to infopage 0.694844 2.001204e-16 3.467486e-12 9.371585e-14
38 7918759 7978833 NM_001001 RPL36AL link to infopage 0.694561 2.082011e-16 3.607500e-12 9.493421e-14
39 7918759 7944216 NM_006476 ATP5L link to infopage 0.694038 2.239379e-16 3.880173e-12 9.949160e-14
40 7918759 7920492 NM_001098616 C1orf43 link to infopage 0.693706 2.345330e-16 4.063753e-12 1.015938e-13
41 7918759 7957052 NM_006431 CCT2 link to infopage 0.692614 2.729420e-16 4.729265e-12 1.153479e-13
42 7918759 8011875 NM_016041 DERL2 link to infopage 0.692241 2.873848e-16 4.979517e-12 1.185599e-13
43 7918759 7975224 NM_004094 EIF2S1 link to infopage 0.692239 2.874716e-16 4.981020e-12 1.158377e-13
44 7918759 8129379 NM_001002030 ECHDC1 link to infopage 0.692160 2.906175e-16 5.035529e-12 1.144438e-13
45 7918759 7971820 NM_016075 VPS36 link to infopage 0.691748 3.076576e-16 5.330783e-12 1.184618e-13
46 7918759 7916836 NM_001018067 SERBP1 link to infopage 0.691172 3.330712e-16 5.771125e-12 1.254592e-13
47 7918759 8019585 NM_030966 KRTAP1-3 link to infopage -0.691119 3.355324e-16 5.813770e-12 1.236972e-13
48 7918759 8015189 NM_030966 KRTAP1-3 link to infopage -0.691119 3.355324e-16 5.813770e-12 1.211202e-13
49 7918759 8082750 NM_024818 UBA5 link to infopage 0.690218 3.797434e-16 6.579815e-12 1.342819e-13
50 7918759 8064844 NM_002592 PCNA link to infopage 0.690047 3.887496e-16 6.735865e-12 1.347173e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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