[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5066	8032839	NM_032108	SEMA6B		sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B

Fetching correlation data, please wait...
Getting list of correlations for id 5066.
Getting list of p-values for id 5066.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.147 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8032839	7919582	XR_039086	LOC100133075	0.824972	2.823497e-27	4.892273e-23	4.892273e-23
2	8032839	7992302	NM_020825	CRAMP1L	0.824408	3.282499e-27	5.687586e-23	2.843793e-23
3	8032839	8041902	NM_002158	FOXN2	-0.808007	2.088799e-25	3.619261e-21	1.206420e-21
4	8032839	8070933	NM_006657	FTCD	0.798201	2.077648e-24	3.599941e-20	8.999852e-21
5	8032839	8080158	NM_080865	GPR62	0.792446	7.547461e-24	1.307749e-19	2.615497e-20
6	8032839	8024100	NM_138690	GRIN3B	0.788860	1.652242e-23	2.862840e-19	4.771400e-20
7	8032839	8067409	NM_005560	LAMA5	0.788405	1.822917e-23	3.158568e-19	4.512240e-20
8	8032839	7987701	NM_016642	SPTBN5	0.788183	1.912231e-23	3.313323e-19	4.141654e-20
9	8032839	8118804	NM_020804	PACSIN1	0.787705	2.119372e-23	3.672237e-19	4.080263e-20
10	8032839	8032312	NM_138813	ATP8B3	0.783671	4.999572e-23	8.662759e-19	8.662759e-20
11	8032839	8176149	NM_139250	CTAG1A	0.783160	5.565381e-23	9.643136e-19	8.766487e-20
12	8032839	8170965	NM_139250	CTAG1A	0.783160	5.565381e-23	9.643136e-19	8.035946e-20
13	8032839	7911435	NM_001014980	FAM132A	0.782508	6.380681e-23	1.105581e-18	8.504466e-20
14	8032839	7946661	NM_015881	DKK3	0.780682	9.330721e-23	1.616734e-18	1.154810e-19
15	8032839	8038725	NM_002776	KLK10	0.780639	9.414469e-23	1.631245e-18	1.087497e-19
16	8032839	8112121	NM_173514	SLC38A9	-0.780430	9.830626e-23	1.703353e-18	1.064595e-19
17	8032839	8114550	NM_004883	NRG2	0.780386	9.919445e-23	1.718742e-18	1.011025e-19
18	8032839	8024655	NM_001135580	C19orf71	0.779622	1.161364e-22	2.012295e-18	1.117942e-19
19	8032839	7913226	NM_012400	PLA2G2D	0.779527	1.184270e-22	2.051985e-18	1.079992e-19
20	8032839	7966690	NM_016569	TBX3	0.778516	1.457781e-22	2.525897e-18	1.262948e-19
21	8032839	8067610	NM_000744	CHRNA4	0.778182	1.560812e-22	2.704419e-18	1.287819e-19
22	8032839	8153101	NM_152888	COL22A1	0.777985	1.624887e-22	2.815442e-18	1.279746e-19
23	8032839	8075118	NM_001887	CRYBB1	0.777097	1.947065e-22	3.373680e-18	1.466817e-19
24	8032839	8087907	NM_020163	SEMA3G	0.776677	2.120732e-22	3.674592e-18	1.531080e-19
25	8032839	8075200	NM_012265	RHBDD3	0.776668	2.124501e-22	3.681123e-18	1.472449e-19
26	8032839	8061944	BC137111	C20orf134	0.776530	2.184962e-22	3.785884e-18	1.456109e-19
27	8032839	8005328	NM_016239	MYO15A	0.776330	2.275098e-22	3.942062e-18	1.460023e-19
28	8032839	8153322	NM_015193	ARC	0.775549	2.664275e-22	4.616389e-18	1.648710e-19
29	8032839	8029870	NM_002517	NPAS1	0.774999	2.975923e-22	5.156382e-18	1.778063e-19
30	8032839	7977216	NM_015656	KIF26A	0.774678	3.174710e-22	5.500820e-18	1.833607e-19
31	8032839	8065334	NM_002509	NKX2-2	0.773899	3.710862e-22	6.429810e-18	2.074132e-19
32	8032839	7977418	NM_001134875	C14orf80	0.773487	4.029013e-22	6.981072e-18	2.181585e-19
33	8032839	7955184	NM_006262	PRPH	0.773271	4.206595e-22	7.288768e-18	2.208717e-19
34	8032839	7945688	NR_003512	INS-IGF2	0.773228	4.242643e-22	7.351227e-18	2.162126e-19
35	8032839	8104122	NM_033178	DUX4	0.773045	4.400240e-22	7.624297e-18	2.178370e-19
36	8032839	8007259	ENST00000225928		0.772963	4.472499e-22	7.749500e-18	2.152639e-19
37	8032839	8038109	NM_017708	FAM83E	0.772528	4.876418e-22	8.449370e-18	2.283614e-19
38	8032839	8006562	NM_033315	RASL10B	0.772410	4.992445e-22	8.650410e-18	2.276424e-19
39	8032839	8033825	NM_015719	COL5A3	0.770074	7.915826e-22	1.371575e-17	3.516860e-19
40	8032839	7949344	NM_005468	NAALADL1	0.769824	8.313847e-22	1.440540e-17	3.601351e-19
41	8032839	8125568	NM_080680	COL11A2	0.769804	8.346282e-22	1.446160e-17	3.527220e-19
42	8032839	7935983	NM_005029	PITX3	0.768919	9.922140e-22	1.719209e-17	4.093355e-19
43	8032839	8001449	NM_024336	IRX3	0.768246	1.130972e-21	1.959635e-17	4.557292e-19
44	8032839	8079021	NM_001904	CTNNB1	-0.767594	1.283629e-21	2.224143e-17	5.054871e-19
45	8032839	8012344	NM_032580	HES7	0.767545	1.295873e-21	2.245359e-17	4.989687e-19
46	8032839	8092888	NM_138399	TMEM44	0.767412	1.329667e-21	2.303914e-17	5.008509e-19
47	8032839	7949015	NM_001144936	C11orf95	0.767129	1.404333e-21	2.433287e-17	5.177206e-19
48	8032839	8045381	NM_058241	CCNT2	-0.766893	1.470076e-21	2.547201e-17	5.306668e-19
49	8032839	7914361	NM_001856	COL16A1	0.766409	1.613842e-21	2.796304e-17	5.706742e-19
50	8032839	8028730	NM_182704	SELV	0.766400	1.616475e-21	2.800867e-17	5.601733e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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