[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2168	7953166	NM_006675	TSPAN9		tetraspanin 9

Fetching correlation data, please wait...
Getting list of correlations for id 2168.
Getting list of p-values for id 2168.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7953166	7995346			0.574285	1.502168e-10	2.602807e-6	2.602807e-6
2	7953166	8116272	NM_014244	ADAMTS2	0.564401	3.600269e-10	6.238185e-6	3.119093e-6
3	7953166	8175455	hsa-mir-504		0.549537	1.271180e-9	2.202573e-5	7.341910e-6
4	7953166	8051024	NM_178553	C2orf53	0.540044	2.756558e-9	4.776289e-5	1.194072e-5
5	7953166	7995868	NM_000339	SLC12A3	0.539726	2.827763e-9	4.899666e-5	9.799331e-6
6	7953166	8030768	NM_001002231	KLK2	0.538932	3.013353e-9	5.221237e-5	8.702062e-6
7	7953166	7995334			0.536312	3.712373e-9	6.432429e-5	9.189185e-6
8	7953166	7995324			0.534798	4.184764e-9	7.250941e-5	9.063676e-6
9	7953166	8032699	NM_015174	ZFR2	0.534113	4.416772e-9	7.652941e-5	8.503268e-6
10	7953166	7945645	NM_001005922	KRTAP5-1	0.533908	4.488791e-9	7.777728e-5	7.777728e-6
11	7953166	7976724	ENST00000362966		0.533489	4.639155e-9	8.038264e-5	7.307513e-6
12	7953166	8071927	NM_005265	GGT1	0.529955	6.113978e-9	1.059369e-4	8.828074e-6
13	7953166	7995340			0.528802	6.686068e-9	1.158495e-4	8.911500e-6
14	7953166	7900352	NM_022120	OXCT2	0.527749	7.252743e-9	1.256683e-4	8.976305e-6
15	7953166	7915257	NM_022120	OXCT2	0.527749	7.252743e-9	1.256683e-4	8.377885e-6
16	7953166	8002939	ENST00000362429		0.527705	7.277039e-9	1.260892e-4	7.880578e-6
17	7953166	8155696	NM_138333	FAM122A	-0.526883	7.752517e-9	1.343279e-4	7.901639e-6
18	7953166	7905559	NM_001010857	LELP1	0.524354	9.410031e-9	1.630476e-4	9.058201e-6
19	7953166	8013068	NM_178836	PLD6	0.523790	9.823169e-9	1.702060e-4	8.958213e-6
20	7953166	8069131	ENST00000443689		0.523688	9.899247e-9	1.715243e-4	8.576213e-6
21	7953166	8038309	NM_031886	KCNA7	0.523273	1.021688e-8	1.770278e-4	8.429896e-6
22	7953166	8107530	ENST00000365222		0.522892	1.051703e-8	1.822286e-4	8.283118e-6
23	7953166	7929664	NM_138413	DHDPSL	0.522718	1.065710e-8	1.846555e-4	8.028500e-6
24	7953166	7960464	NM_000552	VWF	0.522156	1.112063e-8	1.926871e-4	8.028630e-6
25	7953166	8067303	ENST00000443949		0.522055	1.120616e-8	1.941691e-4	7.766766e-6
26	7953166	8061919	NM_005093	CBFA2T2	-0.522034	1.122405e-8	1.944791e-4	7.479964e-6
27	7953166	7953094	NM_199460	CACNA1C	0.521126	1.202100e-8	2.082878e-4	7.714364e-6
28	7953166	7934533	NM_001007271	DUSP13	0.520133	1.295565e-8	2.244826e-4	8.017234e-6
29	7953166	7914617	NM_013411	AK2	-0.519082	1.401994e-8	2.429234e-4	8.376670e-6
30	7953166	8048628	NM_001005209	TMEM198	0.518372	1.478546e-8	2.561876e-4	8.539588e-6
31	7953166	8064108	BC000912	C20orf195	0.517012	1.636571e-8	2.835686e-4	9.147375e-6
32	7953166	7994252	NM_001169	AQP8	0.516833	1.658486e-8	2.873659e-4	8.980184e-6
33	7953166	8075918	BC043218		0.516510	1.698918e-8	2.943715e-4	8.920348e-6
34	7953166	8038565	ENST00000430752		0.516484	1.702170e-8	2.949350e-4	8.674560e-6
35	7953166	7897991	NM_001012277	PRAMEF7	0.516135	1.746857e-8	3.026780e-4	8.647942e-6
36	7953166	7912591	NM_001012277	PRAMEF7	0.516135	1.746857e-8	3.026780e-4	8.407721e-6
37	7953166	7912606	NM_001012277	PRAMEF7	0.516135	1.746857e-8	3.026780e-4	8.180486e-6
38	7953166	8153373	NM_000498	CYP11B2	0.515986	1.766294e-8	3.060457e-4	8.053835e-6
39	7953166	8070482	NR_027272	C21orf129	0.515580	1.820331e-8	3.154087e-4	8.087403e-6
40	7953166	8108435	NM_181838	UBE2D2	-0.515469	1.835338e-8	3.180090e-4	7.950224e-6
41	7953166	7991602	NM_002570	PCSK6	0.513995	2.046702e-8	3.546320e-4	8.649561e-6
42	7953166	7928746	ENST00000384545		0.513609	2.105797e-8	3.648715e-4	8.687416e-6
43	7953166	8016077	NM_001002909	GPATCH8	-0.512953	2.209929e-8	3.829144e-4	8.904986e-6
44	7953166	8062796	NM_024034	GDAP1L1	0.512086	2.355217e-8	4.080884e-4	9.274736e-6
45	7953166	8115691	NM_003062	SLIT3	0.510751	2.596818e-8	4.499506e-4	9.998902e-6
46	7953166	8007537	NM_145273	CD300LG	0.510593	2.627034e-8	4.551862e-4	9.895353e-6
47	7953166	7915598	NM_153274	BEST4	0.510132	2.716748e-8	4.707310e-4	1.001555e-5
48	7953166	7897076	AK055432	MORN1	0.510107	2.721817e-8	4.716093e-4	9.825193e-6
49	7953166	7994961	NM_001330	CTF1	0.509926	2.757849e-8	4.778525e-4	9.752093e-6
50	7953166	8049071			0.509744	2.794610e-8	4.842220e-4	9.684440e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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