[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
730	7960464	NM_000552	VWF		von Willebrand factor

Fetching correlation data, please wait...
Getting list of correlations for id 730.
Getting list of p-values for id 730.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.153 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7960464	8059028	NM_194302	CCDC108	0.798580	1.905503e-24	3.301665e-20	3.301665e-20
2	7960464	7913450	NM_005529	HSPG2	0.780186	1.033833e-22	1.791322e-18	8.956610e-19
3	7960464	7898616	NM_022819	PLA2G2F	0.769099	9.579770e-22	1.659887e-17	5.532956e-18
4	7960464	7987701	NM_016642	SPTBN5	0.761809	3.874207e-21	6.712839e-17	1.678210e-17
5	7960464	7951859	NM_000482	APOA4	0.757521	8.612572e-21	1.492300e-16	2.984601e-17
6	7960464	7899075	NM_004455	EXTL1	0.754890	1.394805e-20	2.416779e-16	4.027965e-17
7	7960464	8137280	NM_000603	NOS3	0.749716	3.536120e-20	6.127035e-16	8.752907e-17
8	7960464	8090639	NM_014602	PIK3R4	-0.744565	8.731611e-20	1.512926e-15	1.891158e-16
9	7960464	8077192	NM_000482	APOA4	0.743129	1.119152e-19	1.939155e-15	2.154616e-16
10	7960464	8137783	NM_001097620	TMEM184A	0.742335	1.282823e-19	2.222748e-15	2.222748e-16
11	7960464	8112121	NM_173514	SLC38A9	-0.741528	1.473161e-19	2.552546e-15	2.320496e-16
12	7960464	8115691	NM_003062	SLIT3	0.740334	1.805666e-19	3.128677e-15	2.607231e-16
13	7960464	7949568	AK090761	LOC100131232	0.740309	1.813501e-19	3.142253e-15	2.417118e-16
14	7960464	7955184	NM_006262	PRPH	0.737023	3.157390e-19	5.470810e-15	3.907722e-16
15	7960464	7952227	NM_015645	C1QTNF5	0.736456	3.471244e-19	6.014624e-15	4.009749e-16
16	7960464	7929664	NM_138413	DHDPSL	0.735867	3.829880e-19	6.636033e-15	4.147520e-16
17	7960464	8170716	NM_005393	PLXNB3	0.734313	4.957176e-19	8.589299e-15	5.052529e-16
18	7960464	7914667	NM_052896	CSMD2	0.732526	6.655164e-19	1.153140e-14	6.406334e-16
19	7960464	7936144	NM_000494	COL17A1	0.731041	8.485069e-19	1.470208e-14	7.737937e-16
20	7960464	7949227	NM_017525	CDC42BPG	0.730632	9.069132e-19	1.571409e-14	7.857043e-16
21	7960464	7915841	NM_001097611	KNCN	0.730195	9.737156e-19	1.687157e-14	8.034081e-16
22	7960464	7927307	NM_001630	ANXA8L2	0.728600	1.260614e-18	2.184265e-14	9.928479e-16
23	7960464	8030582	NM_001145809	MYH14	0.726248	1.838431e-18	3.185449e-14	1.384978e-15
24	7960464	8107897	NM_003687	PDLIM4	0.726103	1.881433e-18	3.259959e-14	1.358316e-15
25	7960464	7927367	NM_001040084	ANXA8	0.726050	1.897395e-18	3.287616e-14	1.315046e-15
26	7960464	8024768	NM_133475	ANKRD24	0.726047	1.898463e-18	3.289466e-14	1.265179e-15
27	7960464	8038598	NM_016148	SHANK1	0.725086	2.212186e-18	3.833054e-14	1.419650e-15
28	7960464	7949679	NM_006946	SPTBN2	0.723882	2.676973e-18	4.638392e-14	1.656569e-15
29	7960464	7917754	NM_003567	BCAR3	0.723781	2.719989e-18	4.712924e-14	1.625146e-15
30	7960464	8084496	NM_003741	CHRD	0.722771	3.189380e-18	5.526238e-14	1.842079e-15
31	7960464	8028407	NM_000540	RYR1	0.721769	3.731750e-18	6.466003e-14	2.085807e-15
32	7960464	8173106	NM_198510	ITIH5L	0.721167	4.099933e-18	7.103955e-14	2.219986e-15
33	7960464	8042119	NM_022894	PAPOLG	-0.720045	4.883192e-18	8.461107e-14	2.563972e-15
34	7960464	8112072	NM_021147	CCNO	0.719419	5.380831e-18	9.323365e-14	2.742166e-15
35	7960464	8157804	NM_182487	OLFML2A	0.717939	6.762537e-18	1.171745e-13	3.347842e-15
36	7960464	8066757	NM_022829	SLC13A3	0.717554	7.175068e-18	1.243224e-13	3.453400e-15
37	7960464	7946860	NM_000352	ABCC8	0.717474	7.264352e-18	1.258694e-13	3.401876e-15
38	7960464	8048272	BC052750	C2orf62	0.716869	7.970854e-18	1.381110e-13	3.634499e-15
39	7960464	7955305	NM_001652	AQP6	0.716824	8.025678e-18	1.390609e-13	3.565665e-15
40	7960464	8153101	NM_152888	COL22A1	0.715202	1.028225e-17	1.781605e-13	4.454012e-15
41	7960464	8117849	NM_033229	TRIM15	0.714540	1.136929e-17	1.969957e-13	4.804774e-15
42	7960464	8177760	NM_033229	TRIM15	0.714540	1.136929e-17	1.969957e-13	4.690375e-15
43	7960464	8179070	NM_033229	TRIM15	0.714540	1.136929e-17	1.969957e-13	4.581296e-15
44	7960464	8108453	NM_032289	PSD2	0.713119	1.409528e-17	2.442289e-13	5.550657e-15
45	7960464	7914042	NM_004672	MAP3K6	0.711708	1.742784e-17	3.019722e-13	6.710494e-15
46	7960464	8015189	NM_030966	KRTAP1-3	0.711567	1.779859e-17	3.083961e-13	6.704263e-15
47	7960464	8019585	NM_030966	KRTAP1-3	0.711567	1.779859e-17	3.083961e-13	6.561619e-15
48	7960464	7992954	AK098732	TRAP1	0.711029	1.929178e-17	3.342687e-13	6.963931e-15
49	7960464	8104281	NM_182632	SLC6A18	0.710644	2.043208e-17	3.540266e-13	7.225033e-15
50	7960464	7943969	NM_213621	HTR3A	0.710299	2.151253e-17	3.727476e-13	7.454951e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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