[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5294	7943969	NM_213621	HTR3A		5-hydroxytryptamine (serotonin) receptor 3A

Fetching correlation data, please wait...
Getting list of correlations for id 5294.
Getting list of p-values for id 5294.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7943969	7899075	NM_004455	EXTL1	0.753500	1.794738e-20	3.109743e-16	3.109743e-16
2	7943969	7991138	NM_021077	NMB	0.751850	2.415772e-20	4.185809e-16	2.092904e-16
3	7943969	8173106	NM_198510	ITIH5L	0.735490	4.077995e-19	7.065941e-15	2.355314e-15
4	7943969	8010320	NM_005189	CBX2	0.733157	5.999686e-19	1.039566e-14	2.598914e-15
5	7943969	7914667	NM_052896	CSMD2	0.731673	7.653101e-19	1.326053e-14	2.652106e-15
6	7943969	8025053	NM_003811	TNFSF9	0.727612	1.477936e-18	2.560820e-14	4.268033e-15
7	7943969	7927307	NM_001630	ANXA8L2	0.724398	2.467238e-18	4.274984e-14	6.107119e-15
8	7943969	8134907	NM_000799	EPO	0.723611	2.793840e-18	4.840886e-14	6.051108e-15
9	7943969	7898616	NM_022819	PLA2G2F	0.722685	3.232520e-18	5.600987e-14	6.223319e-15
10	7943969	8137783	NM_001097620	TMEM184A	0.721595	3.835137e-18	6.645142e-14	6.645142e-15
11	7943969	7952927	NM_173593	B4GALNT3	0.720925	4.257719e-18	7.377351e-14	6.706682e-15
12	7943969	7928645	NM_001099338	FAM22A	0.719409	5.389044e-18	9.337596e-14	7.781330e-15
13	7943969	8076072	NM_152868	KCNJ4	0.719181	5.583416e-18	9.674385e-14	7.441834e-15
14	7943969	7928653	NM_001099338	FAM22A	0.718926	5.808092e-18	1.006368e-13	7.188344e-15
15	7943969	7953150	NM_003213	TEAD4	0.717392	7.356763e-18	1.274706e-13	8.498042e-15
16	7943969	8008228	NM_138281	DLX4	0.717176	7.603916e-18	1.317531e-13	8.234566e-15
17	7943969	8130859	NM_214462	DACT2	0.716618	8.283853e-18	1.435343e-13	8.443195e-15
18	7943969	7927367	NM_001040084	ANXA8	0.716441	8.510308e-18	1.474581e-13	8.192117e-15
19	7943969	7970241	NM_000504	F10	0.715996	9.110200e-18	1.578524e-13	8.308023e-15
20	7943969	8028407	NM_000540	RYR1	0.715927	9.206129e-18	1.595146e-13	7.975730e-15
21	7943969	8102695			0.715434	9.925000e-18	1.719705e-13	8.189071e-15
22	7943969	8006562	NM_033315	RASL10B	0.714350	1.170211e-17	2.027625e-13	9.216479e-15
23	7943969	7948303	ENST00000319748		0.714305	1.178271e-17	2.041591e-13	8.876481e-15
24	7943969	8083887	NM_005602	CLDN11	0.714299	1.179248e-17	2.043283e-13	8.513680e-15
25	7943969	7948176	NM_033396	TNKS1BP1	0.713581	1.314698e-17	2.277977e-13	9.111907e-15
26	7943969	8042558	NM_024933	ANKRD53	0.712403	1.570019e-17	2.720372e-13	1.046297e-14
27	7943969	8156196	NM_001001709	C9orf170	0.712388	1.573629e-17	2.726627e-13	1.009862e-14
28	7943969	8085504	NM_001080423	GRIP2	0.712086	1.646631e-17	2.853118e-13	1.018971e-14
29	7943969	7991939	NM_145294	WDR90	0.710969	1.946466e-17	3.372642e-13	1.162980e-14
30	7943969	8038571	NM_138334	JOSD2	0.710646	2.042773e-17	3.539514e-13	1.179838e-14
31	7943969	7960464	NM_000552	VWF	0.710299	2.151253e-17	3.727476e-13	1.202412e-14
32	7943969	8112072	NM_021147	CCNO	0.709240	2.518163e-17	4.363222e-13	1.363507e-14
33	7943969	7923347	NM_005558	LAD1	0.708821	2.679279e-17	4.642387e-13	1.406784e-14
34	7943969	7955184	NM_006262	PRPH	0.708496	2.811468e-17	4.871431e-13	1.432774e-14
35	7943969	8079896	NM_004186	SEMA3F	0.708036	3.008994e-17	5.213684e-13	1.489624e-14
36	7943969	8115691	NM_003062	SLIT3	0.707478	3.267355e-17	5.661346e-13	1.572596e-14
37	7943969	7940530	NM_001127392	C11orf9	0.707141	3.433130e-17	5.948584e-13	1.607725e-14
38	7943969	7996651	NM_001012984	C16orf86	0.707125	3.441344e-17	5.962817e-13	1.569162e-14
39	7943969	7951987	NM_001077263	TMPRSS13	0.706602	3.716072e-17	6.438839e-13	1.650984e-14
40	7943969	8024896	hsa-mir-7-3		0.706417	3.818541e-17	6.616387e-13	1.654097e-14
41	7943969	7935983	NM_005029	PITX3	0.706082	4.010682e-17	6.949310e-13	1.694954e-14
42	7943969	7911435	NM_001014980	FAM132A	0.705098	4.630218e-17	8.022778e-13	1.910185e-14
43	7943969	8027728	NM_182983	HPN	0.704131	5.330170e-17	9.235585e-13	2.147811e-14
44	7943969	8170513	NM_033085	FATE1	0.703643	5.721141e-17	9.913021e-13	2.252959e-14
45	7943969	8162479	NM_017561	FAM22F	0.703422	5.906958e-17	1.023499e-12	2.274441e-14
46	7943969	8071745	NM_182520	C22orf15	0.703251	6.055220e-17	1.049188e-12	2.280843e-14
47	7943969	7896985	NM_080875	MIB2	0.703072	6.213528e-17	1.076618e-12	2.290676e-14
48	7943969	8110114	NM_006650	CPLX2	0.703059	6.225907e-17	1.078763e-12	2.247423e-14
49	7943969	7909965	NM_152610	C1orf65	0.702865	6.402650e-17	1.109387e-12	2.264055e-14
50	7943969	8028389	NM_001042522	SPRED3	0.702728	6.530774e-17	1.131587e-12	2.263174e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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