[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3362	8137280	NM_000603	NOS3		nitric oxide synthase 3 (endothelial cell)

Fetching correlation data, please wait...
Getting list of correlations for id 3362.
Getting list of p-values for id 3362.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8137280	7913450	NM_005529	HSPG2	0.787271	2.326568e-23	4.031245e-19	4.031245e-19
2	8137280	8059028	NM_194302	CCDC108	0.782198	6.807879e-23	1.179601e-18	5.898006e-19
3	8137280	7987701	NM_016642	SPTBN5	0.778407	1.490569e-22	2.582708e-18	8.609028e-19
4	8137280	8070933	NM_006657	FTCD	0.769283	9.240922e-22	1.601174e-17	4.002936e-18
5	8137280	8137783	NM_001097620	TMEM184A	0.769191	9.408984e-22	1.630295e-17	3.260589e-18
6	8137280	8036072	NM_207392	KRTDAP	0.761931	3.786782e-21	6.561357e-17	1.093559e-17
7	8137280	8153101	NM_152888	COL22A1	0.760893	4.602145e-21	7.974137e-17	1.139162e-17
8	8137280	8035408	NM_000923	PDE4C	0.760848	4.641238e-21	8.041874e-17	1.005234e-17
9	8137280	8108453	NM_032289	PSD2	0.758142	7.679862e-21	1.330690e-16	1.478544e-17
10	8137280	7949568	AK090761	LOC100131232	0.757331	8.919846e-21	1.545542e-16	1.545542e-17
11	8137280	8092201	NM_024665	TBL1XR1	-0.756076	1.123104e-20	1.946003e-16	1.769094e-17
12	8137280	8112121	NM_173514	SLC38A9	-0.753136	1.916635e-20	3.320954e-16	2.767462e-17
13	8137280	8060594	NM_001501	GNRH2	0.750062	3.325052e-20	5.761317e-16	4.431782e-17
14	8137280	7960464	NM_000552	VWF	0.749716	3.536120e-20	6.127035e-16	4.376453e-17
15	8137280	8116195	NM_173465	COL23A1	0.748561	4.338900e-20	7.518012e-16	5.012008e-17
16	8137280	8046922	NM_000090	COL3A1	0.748480	4.401184e-20	7.625932e-16	4.766207e-17
17	8137280	7955589	NM_002135	NR4A1	0.747596	5.143831e-20	8.912716e-16	5.242774e-17
18	8137280	7931519	NM_152643	KNDC1	0.747308	5.411057e-20	9.375738e-16	5.208743e-17
19	8137280	8090639	NM_014602	PIK3R4	-0.746601	6.124496e-20	1.061191e-15	5.585218e-17
20	8137280	8114550	NM_004883	NRG2	0.746293	6.463482e-20	1.119928e-15	5.599638e-17
21	8137280	8084219	NM_017644	KLHL24	-0.746110	6.674039e-20	1.156411e-15	5.506718e-17
22	8137280	8156415	NM_006648	WNK2	0.746041	6.754908e-20	1.170423e-15	5.320104e-17
23	8137280	7970262	NM_001008895	CUL4A	-0.745866	6.964350e-20	1.206713e-15	5.246578e-17
24	8137280	7997801	NM_013278	IL17C	0.743863	9.860550e-20	1.708537e-15	7.118906e-17
25	8137280	8024655	NM_001135580	C19orf71	0.743782	9.998878e-20	1.732506e-15	6.930022e-17
26	8137280	8125234	NM_019105	TNXB	0.743064	1.131780e-19	1.961035e-15	7.542444e-17
27	8137280	8136080	NM_005631	SMO	0.742208	1.311266e-19	2.272030e-15	8.414927e-17
28	8137280	7898616	NM_022819	PLA2G2F	0.741886	1.385558e-19	2.400757e-15	8.574131e-17
29	8137280	8013384	NM_000691	ALDH3A1	0.741214	1.554411e-19	2.693329e-15	9.287341e-17
30	8137280	8075118	NM_001887	CRYBB1	0.740636	1.715241e-19	2.971999e-15	9.906663e-17
31	8137280	7951859	NM_000482	APOA4	0.740474	1.763257e-19	3.055196e-15	9.855472e-17
32	8137280	7955184	NM_006262	PRPH	0.740227	1.838738e-19	3.185981e-15	9.956191e-17
33	8137280	7927367	NM_001040084	ANXA8	0.739723	2.003112e-19	3.470792e-15	1.051755e-16
34	8137280	7931439	NM_006426	DPYSL4	0.738101	2.634725e-19	4.565188e-15	1.342702e-16
35	8137280	7992518	NM_014353	RAB26	0.738070	2.648171e-19	4.588487e-15	1.310996e-16
36	8137280	8016320	NM_203400	RPRML	0.737246	3.041452e-19	5.269925e-15	1.463868e-16
37	8137280	7929664	NM_138413	DHDPSL	0.736870	3.239542e-19	5.613155e-15	1.517069e-16
38	8137280	8010719	NM_144999	LRRC45	0.736589	3.395341e-19	5.883108e-15	1.548186e-16
39	8137280	7942123	NM_053056	CCND1	0.735496	4.073672e-19	7.058451e-15	1.809859e-16
40	8137280	7927307	NM_001630	ANXA8L2	0.735441	4.111545e-19	7.124074e-15	1.781019e-16
41	8137280	8163548	NM_138424	KIF12	0.735364	4.164097e-19	7.215132e-15	1.759788e-16
42	8137280	8153322	NM_015193	ARC	0.734244	5.014219e-19	8.688138e-15	2.068604e-16
43	8137280	7914667	NM_052896	CSMD2	0.734197	5.053819e-19	8.756752e-15	2.036454e-16
44	8137280	8027556	NM_002333	LRP3	0.734064	5.165988e-19	8.951107e-15	2.034342e-16
45	8137280	7907549	NM_022093	TNN	0.732793	6.369515e-19	1.103646e-14	2.452546e-16
46	8137280	8043114	NM_031283	TCF7L1	0.731540	7.821590e-19	1.355247e-14	2.946189e-16
47	8137280	7914260	NM_002379	MATN1	0.731522	7.844590e-19	1.359232e-14	2.891983e-16
48	8137280	8162283	NM_004560	ROR2	0.731354	8.062754e-19	1.397033e-14	2.910486e-16
49	8137280	8042119	NM_022894	PAPOLG	-0.731199	8.269171e-19	1.432799e-14	2.924080e-16
50	8137280	8116033	NM_000505	F12	0.731127	8.366841e-19	1.449723e-14	2.899445e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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