[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1834	8108453	NM_032289	PSD2		pleckstrin and Sec7 domain containing 2

Fetching correlation data, please wait...
Getting list of correlations for id 1834.
Getting list of p-values for id 1834.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8108453	7913450	NM_005529	HSPG2	0.787643	2.148213e-23	3.722209e-19	3.722209e-19
2	8108453	8046922	NM_000090	COL3A1	0.786282	2.874597e-23	4.980815e-19	2.490407e-19
3	8108453	7987701	NM_016642	SPTBN5	0.785921	3.104721e-23	5.379549e-19	1.793183e-19
4	8108453	8038598	NM_016148	SHANK1	0.768383	1.101436e-21	1.908458e-17	4.771144e-18
5	8108453	7925813	NR_027152	C10orf108	0.766522	1.578900e-21	2.735759e-17	5.471518e-18
6	8108453	8037767	NM_018215	PNMAL1	0.761937	3.782538e-21	6.554004e-17	1.092334e-17
7	8108453	7946860	NM_000352	ABCC8	0.760944	4.558129e-21	7.897871e-17	1.128267e-17
8	8108453	7936762	NM_001001976	ATE1	-0.759297	6.199569e-21	1.074199e-16	1.342749e-17
9	8108453	8159734	NM_000718	CACNA1B	0.759061	6.476696e-21	1.122217e-16	1.246908e-17
10	8108453	7937560	NM_002457	MUC2	0.758973	6.584073e-21	1.140822e-16	1.140822e-17
11	8108453	8007584	NM_080863	ASB16	0.758692	6.936059e-21	1.201811e-16	1.092555e-17
12	8108453	8114550	NM_004883	NRG2	0.758316	7.437080e-21	1.288623e-16	1.073852e-17
13	8108453	8137280	NM_000603	NOS3	0.758142	7.679862e-21	1.330690e-16	1.023607e-17
14	8108453	8084219	NM_017644	KLHL24	-0.757225	9.095735e-21	1.576018e-16	1.125727e-17
15	8108453	7997801	NM_013278	IL17C	0.757068	9.361766e-21	1.622113e-16	1.081409e-17
16	8108453	7927367	NM_001040084	ANXA8	0.756509	1.037397e-20	1.797498e-16	1.123436e-17
17	8108453	7970262	NM_001008895	CUL4A	-0.754247	1.567587e-20	2.716158e-16	1.597740e-17
18	8108453	7927307	NM_001630	ANXA8L2	0.753796	1.701271e-20	2.947792e-16	1.637662e-17
19	8108453	7912968	NM_152232	TAS1R2	0.752975	1.973396e-20	3.419304e-16	1.799633e-17
20	8108453	8042119	NM_022894	PAPOLG	-0.752834	2.024045e-20	3.507062e-16	1.753531e-17
21	8108453	7896798	NM_032129	PLEKHN1	0.752662	2.087839e-20	3.617599e-16	1.722666e-17
22	8108453	8153101	NM_152888	COL22A1	0.751671	2.494838e-20	4.322807e-16	1.964912e-17
23	8108453	7997245			0.751064	2.780956e-20	4.818563e-16	2.095027e-17
24	8108453	8034747	ENST00000343945		0.750267	3.206116e-20	5.555237e-16	2.314682e-17
25	8108453	8079021	NM_001904	CTNNB1	-0.750056	3.328817e-20	5.767842e-16	2.307137e-17
26	8108453	7920191	NM_178431	LCE3A	0.749413	3.731829e-20	6.466141e-16	2.486977e-17
27	8108453	7947991	NM_015231	NUP160	-0.748781	4.173800e-20	7.231944e-16	2.678498e-17
28	8108453	7983663	NM_005154	USP8	-0.748644	4.276230e-20	7.409423e-16	2.646223e-17
29	8108453	7905025	NM_000798	DRD5	0.748211	4.615421e-20	7.997140e-16	2.757635e-17
30	8108453	8090639	NM_014602	PIK3R4	-0.747829	4.936813e-20	8.554015e-16	2.851338e-17
31	8108453	8092201	NM_024665	TBL1XR1	-0.747684	5.064984e-20	8.776098e-16	2.830999e-17
32	8108453	8070933	NM_006657	FTCD	0.747415	5.309834e-20	9.200349e-16	2.875109e-17
33	8108453	7948920	NM_004790	SLC22A6	0.746228	6.537324e-20	1.132722e-15	3.432491e-17
34	8108453	8156415	NM_006648	WNK2	0.745497	7.426656e-20	1.286817e-15	3.784755e-17
35	8108453	8059028	NM_194302	CCDC108	0.745246	7.758266e-20	1.344275e-15	3.840785e-17
36	8108453	7914260	NM_002379	MATN1	0.745147	7.892408e-20	1.367518e-15	3.798660e-17
37	8108453	7955184	NM_006262	PRPH	0.744935	8.188918e-20	1.418894e-15	3.834848e-17
38	8108453	8029728	NM_000164	GIPR	0.744179	9.335764e-20	1.617608e-15	4.256863e-17
39	8108453	7977216	NM_015656	KIF26A	0.743684	1.017093e-19	1.762318e-15	4.518763e-17
40	8108453	8052024	NM_025133	FBXO11	-0.743219	1.101905e-19	1.909271e-15	4.773178e-17
41	8108453	8113981	NM_004199	P4HA2	0.742852	1.173876e-19	2.033974e-15	4.960913e-17
42	8108453	8042537	NM_001692	ATP6V1B1	0.742759	1.192859e-19	2.066867e-15	4.921111e-17
43	8108453	8036883	NM_144685	HIPK4	0.742314	1.287525e-19	2.230894e-15	5.188126e-17
44	8108453	7918394	NM_139053	EPS8L3	0.741772	1.412968e-19	2.448250e-15	5.564205e-17
45	8108453	8116033	NM_000505	F12	0.741397	1.506324e-19	2.610008e-15	5.800018e-17
46	8108453	7980219	NM_031464	RPS6KL1	0.740730	1.688116e-19	2.924999e-15	6.358694e-17
47	8108453	7903632	NM_001408	CELSR2	0.740372	1.794039e-19	3.108532e-15	6.613897e-17
48	8108453	7956120	NM_001982	ERBB3	0.740261	1.828286e-19	3.167872e-15	6.599732e-17
49	8108453	8048541	NM_001927	DES	0.740137	1.867100e-19	3.235123e-15	6.602293e-17
50	8108453	8060134	NM_004321	KIF1A	0.739896	1.945064e-19	3.370212e-15	6.740425e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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