[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3567	8067610	NM_000744	CHRNA4		cholinergic receptor, nicotinic, alpha 4

Fetching correlation data, please wait...
Getting list of correlations for id 3567.
Getting list of p-values for id 3567.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8067610	8166956	NM_021140	KDM6A	-0.830468	6.334854e-28	1.097640e-23	1.097640e-23
2	8067610	7936762	NM_001001976	ATE1	-0.828216	1.176165e-27	2.037941e-23	1.018970e-23
3	8067610	7955184	NM_006262	PRPH	0.824209	3.461030e-27	5.996926e-23	1.998975e-23
4	8067610	8024013	BC052236	C19orf21	0.819991	1.046819e-26	1.813823e-22	4.534558e-23
5	8067610	8064111	NM_032957	RTEL1	0.817960	1.765420e-26	3.058942e-22	6.117885e-23
6	8067610	8132070	NM_002047	GARS	-0.815665	3.162401e-26	5.479492e-22	9.132486e-23
7	8067610	8005328	NM_016239	MYO15A	0.809519	1.448452e-25	2.509733e-21	3.585333e-22
8	8067610	7945688	NR_003512	INS-IGF2	0.807161	2.559803e-25	4.435370e-21	5.544213e-22
9	8067610	7952893	BC024764	IQSEC3	0.806123	3.280762e-25	5.684576e-21	6.316196e-22
10	8067610	8079021	NM_001904	CTNNB1	-0.802687	7.380090e-25	1.278748e-20	1.278748e-21
11	8067610	8096556	NM_015143	METAP1	-0.801412	9.931852e-25	1.720892e-20	1.564447e-21
12	8067610	8070933	NM_006657	FTCD	0.797602	2.380768e-24	4.125156e-20	3.437630e-21
13	8067610	8050565	NM_015317	PUM2	-0.796993	2.733130e-24	4.735695e-20	3.642842e-21
14	8067610	8121209	NM_005604	POU3F2	0.795519	3.809858e-24	6.601342e-20	4.715244e-21
15	8067610	8098512	NM_021942	C4orf41	-0.795209	4.083781e-24	7.075967e-20	4.717311e-21
16	8067610	8009382	NM_004459	BPTF	-0.794823	4.451817e-24	7.713663e-20	4.821040e-21
17	8067610	8033462	NM_206833	CTXN1	0.794591	4.688755e-24	8.124206e-20	4.778945e-21
18	8067610	8024712	NM_033064	ATCAY	0.793939	5.421969e-24	9.394646e-20	5.219248e-21
19	8067610	7955019	NM_152641	ARID2	-0.793318	6.223660e-24	1.078374e-19	5.675650e-21
20	8067610	8067409	NM_005560	LAMA5	0.792941	6.765972e-24	1.172340e-19	5.861700e-21
21	8067610	7911413	NM_003327	TNFRSF4	0.792877	6.861461e-24	1.188885e-19	5.661359e-21
22	8067610	7936826	NM_022466	IKZF5	-0.792558	7.363234e-24	1.275828e-19	5.799216e-21
23	8067610	7987701	NM_016642	SPTBN5	0.791986	8.351906e-24	1.447135e-19	6.291891e-21
24	8067610	8054614	NM_022662	ANAPC1	-0.791584	9.124089e-24	1.580931e-19	6.587212e-21
25	8067610	7897416	NM_001080397	SLC45A1	0.790796	1.084485e-23	1.879087e-19	7.516347e-21
26	8067610	7998015	NM_032451	SPIRE2	0.790638	1.122609e-23	1.945144e-19	7.481325e-21
27	8067610	8159036	NM_139025	ADAMTS13	0.789955	1.302662e-23	2.257123e-19	8.359713e-21
28	8067610	7937560	NM_002457	MUC2	0.789884	1.323020e-23	2.292397e-19	8.187132e-21
29	8067610	7920744	NM_000298	PKLR	0.789815	1.343132e-23	2.327245e-19	8.024982e-21
30	8067610	8151149	NM_006421	ARFGEF1	-0.789682	1.382316e-23	2.395138e-19	7.983794e-21
31	8067610	7970241	NM_000504	F10	0.789635	1.396601e-23	2.419890e-19	7.806097e-21
32	8067610	7903632	NM_001408	CELSR2	0.789543	1.424795e-23	2.468742e-19	7.714820e-21
33	8067610	8017235	NM_006380	APPBP2	-0.788642	1.731873e-23	3.000816e-19	9.093383e-21
34	8067610	8045381	NM_058241	CCNT2	-0.788576	1.756786e-23	3.043983e-19	8.952892e-21
35	8067610	8129522	NM_004830	MED23	-0.788131	1.933737e-23	3.350587e-19	9.573105e-21
36	8067610	8074063	NM_024866	ADM2	0.786519	2.733206e-23	4.735826e-19	1.315507e-20
37	8067610	8100902	NM_032217	ANKRD17	-0.786485	2.753047e-23	4.770204e-19	1.289244e-20
38	8067610	7995088	NM_001008274	TRIM72	0.785628	3.304674e-23	5.726008e-19	1.506844e-20
39	8067610	7983744	NM_014547	TMOD3	-0.784975	3.795720e-23	6.576845e-19	1.686370e-20
40	8067610	8012344	NM_032580	HES7	0.784916	3.843750e-23	6.660066e-19	1.665017e-20
41	8067610	8166500	NM_003410	ZFX	-0.784326	4.354186e-23	7.544499e-19	1.840122e-20
42	8067610	8090772	NM_007027	TOPBP1	-0.783852	4.811715e-23	8.337258e-19	1.985062e-20
43	8067610	7903239	NM_000028	AGL	-0.783482	5.201793e-23	9.013147e-19	2.096081e-20
44	8067610	8091048	NR_023350	COPB2	-0.783002	5.752936e-23	9.968113e-19	2.265480e-20
45	8067610	8032197	NM_152769	C19orf26	0.782835	5.958059e-23	1.032353e-18	2.294118e-20
46	8067610	7946354	NM_002315	LMO1	0.782576	6.290830e-23	1.090012e-18	2.369592e-20
47	8067610	8153876	NM_025251	ARHGAP39	0.782322	6.633534e-23	1.149393e-18	2.445516e-20
48	8067610	8075200	NM_012265	RHBDD3	0.781851	7.318217e-23	1.268027e-18	2.641724e-20
49	8067610	7923628	NM_198447	GOLT1A	0.781685	7.575404e-23	1.312590e-18	2.678756e-20
50	8067610	7914667	NM_052896	CSMD2	0.781082	8.586990e-23	1.487868e-18	2.975736e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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