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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
5943 7898300 NM_004070 CLCNKA link to infopage chloride channel Ka

Fetching correlation data, please wait...
Getting list of correlations for id 5943.
Getting list of p-values for id 5943.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7898300 7937560 NM_002457 MUC2 link to infopage 0.801716 9.253865e-25 1.603417e-20 1.603417e-20
2 7898300 8075211 NM_001007279 RASL10A link to infopage 0.791024 1.031536e-23 1.787343e-19 8.936715e-20
3 7898300 7952227 NM_015645 C1QTNF5 link to infopage 0.786875 2.532755e-23 4.388504e-19 1.462835e-19
4 7898300 8086540 NM_020208 SLC6A20 link to infopage 0.781797 7.401325e-23 1.282428e-18 3.206069e-19
5 7898300 8073941 ENST00000411210 link to infopage 0.781216 8.352500e-23 1.447238e-18 2.894475e-19
6 7898300 8125843 NM_012391 SPDEF link to infopage 0.776558 2.172398e-22 3.764114e-18 6.273523e-19
7 7898300 7977978 NM_005864 EFS link to infopage 0.775202 2.857040e-22 4.950393e-18 7.071991e-19
8 7898300 8067409 NM_005560 LAMA5 link to infopage 0.774988 2.982988e-22 5.168624e-18 6.460780e-19
9 7898300 8003939 NM_003963 TM4SF5 link to infopage 0.774496 3.292902e-22 5.705611e-18 6.339567e-19
10 7898300 8021199 NM_002747 MAPK4 link to infopage 0.770393 7.435345e-22 1.288322e-17 1.288322e-18
11 7898300 7990928 ENST00000342039 link to infopage 0.769244 9.311334e-22 1.613375e-17 1.466704e-18
12 7898300 7985418 ENST00000342039 link to infopage 0.769244 9.311334e-22 1.613375e-17 1.344479e-18
13 7898300 7985459 ENST00000342039 link to infopage 0.769244 9.311334e-22 1.613375e-17 1.241058e-18
14 7898300 8015210 NM_033184 KRTAP2-4 link to infopage 0.769166 9.454798e-22 1.638233e-17 1.170166e-18
15 7898300 8019576 NM_033184 KRTAP2-4 link to infopage 0.769166 9.454798e-22 1.638233e-17 1.092155e-18
16 7898300 7897066 NR_024445 LOC100128003 link to infopage 0.768027 1.180143e-21 2.044834e-17 1.278021e-18
17 7898300 8090044 NM_001031702 SEMA5B link to infopage 0.767081 1.417427e-21 2.455976e-17 1.444692e-18
18 7898300 8038109 NM_017708 FAM83E link to infopage 0.766715 1.521476e-21 2.636261e-17 1.464590e-18
19 7898300 8157804 NM_182487 OLFML2A link to infopage 0.766689 1.528939e-21 2.649193e-17 1.394312e-18
20 7898300 8028407 NM_000540 RYR1 link to infopage 0.766140 1.699594e-21 2.944886e-17 1.472443e-18
21 7898300 7969372 ENST00000362412 link to infopage 0.763782 2.667564e-21 4.622087e-17 2.200994e-18
22 7898300 8110821 NM_001044 SLC6A3 link to infopage 0.761452 4.143578e-21 7.179578e-17 3.263445e-18
23 7898300 7941743 NM_024036 LRFN4 link to infopage 0.761185 4.356349e-21 7.548245e-17 3.281846e-18
24 7898300 7915078 NM_173641 EPHA10 link to infopage 0.760428 5.020525e-21 8.699063e-17 3.624610e-18
25 7898300 8119435 NM_004828 NCR2 link to infopage 0.759790 5.655850e-21 9.799892e-17 3.919957e-18
26 7898300 8016646 NM_000088 COL1A1 link to infopage 0.759123 6.402342e-21 1.109334e-16 4.266669e-18
27 7898300 8110631 NM_152547 BTNL9 link to infopage 0.758886 6.691056e-21 1.159359e-16 4.293923e-18
28 7898300 7977299 NM_001112726 KIAA0284 link to infopage 0.758845 6.741989e-21 1.168185e-16 4.172088e-18
29 7898300 7937667 NM_003957 BRSK2 link to infopage 0.758676 6.957403e-21 1.205509e-16 4.156928e-18
30 7898300 7923360 NM_003281 TNNI1 link to infopage 0.758572 7.092119e-21 1.228851e-16 4.096172e-18
31 7898300 8010113 NM_144677 MGAT5B link to infopage 0.758341 7.402773e-21 1.282679e-16 4.137673e-18
32 7898300 8015214 NM_033184 KRTAP2-4 link to infopage 0.757529 8.600891e-21 1.490276e-16 4.657114e-18
33 7898300 8019574 NM_033184 KRTAP2-4 link to infopage 0.757529 8.600891e-21 1.490276e-16 4.515989e-18
34 7898300 8015208 NM_001123387 KRTAP2-1 link to infopage 0.756888 9.678003e-21 1.676908e-16 4.932081e-18
35 7898300 8037732 NM_001029861 NANOS2 link to infopage 0.755857 1.169085e-20 2.025673e-16 5.787638e-18
36 7898300 8155083 NM_001216 CA9 link to infopage 0.755119 1.337607e-20 2.317671e-16 6.437975e-18
37 7898300 7915257 NM_022120 OXCT2 link to infopage 0.754995 1.368382e-20 2.370996e-16 6.408097e-18
38 7898300 7900352 NM_022120 OXCT2 link to infopage 0.754995 1.368382e-20 2.370996e-16 6.239463e-18
39 7898300 7897196 NM_152492 CCDC27 link to infopage 0.754656 1.455241e-20 2.521496e-16 6.465374e-18
40 7898300 8115691 NM_003062 SLIT3 link to infopage 0.753440 1.814254e-20 3.143558e-16 7.858894e-18
41 7898300 7913450 NM_005529 HSPG2 link to infopage 0.752433 2.175539e-20 3.769556e-16 9.194040e-18
42 7898300 8153101 NM_152888 COL22A1 link to infopage 0.751208 2.710352e-20 4.696226e-16 1.118149e-17
43 7898300 8107530 ENST00000365222 link to infopage 0.750328 3.171234e-20 5.494796e-16 1.277860e-17
44 7898300 8036989 ENST00000412510 link to infopage 0.749385 3.749884e-20 6.497424e-16 1.476687e-17
45 7898300 7914326 NM_024522 NKAIN1 link to infopage 0.749303 3.805209e-20 6.593286e-16 1.465175e-17
46 7898300 8015206 NM_001123387 KRTAP2-1 link to infopage 0.749248 3.842078e-20 6.657169e-16 1.447211e-17
47 7898300 8148517 NM_001702 BAI1 link to infopage 0.749224 3.858639e-20 6.685864e-16 1.422524e-17
48 7898300 8159036 NM_139025 ADAMTS13 link to infopage 0.748786 4.170082e-20 7.225501e-16 1.505313e-17
49 7898300 7971150 NM_005780 LHFP link to infopage 0.748767 4.183636e-20 7.248986e-16 1.479385e-17
50 7898300 8008228 NM_138281 DLX4 link to infopage 0.748674 4.252973e-20 7.369126e-16 1.473825e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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