[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2814	7966052	NM_004075	CRY1		cryptochrome 1 (photolyase-like)

Fetching correlation data, please wait...
Getting list of correlations for id 2814.
Getting list of p-values for id 2814.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7966052	8128572	NM_002726	PREP	0.775957	2.453413e-22	4.251029e-18	4.251029e-18
2	7966052	8045425	NM_015361	R3HDM1	0.746123	6.659121e-20	1.153826e-15	5.769129e-16
3	7966052	7965812	NM_024312	GNPTAB	0.739538	2.067053e-19	3.581582e-15	1.193861e-15
4	7966052	8136614	NM_018238	AGK	0.737512	2.908936e-19	5.040314e-15	1.260079e-15
5	7966052	8020806	NM_017831	RNF125	0.735102	4.349808e-19	7.536913e-15	1.507383e-15
6	7966052	8128956	NM_002037	FYN	0.728846	1.211589e-18	2.099321e-14	3.498868e-15
7	7966052	8114455	NM_004134	HSPA9	0.727591	1.482741e-18	2.569146e-14	3.670208e-15
8	7966052	7909815	NM_018060	IARS2	0.724596	2.390823e-18	4.142580e-14	5.178224e-15
9	7966052	7915995	NM_007051	FAF1	0.723771	2.724165e-18	4.720161e-14	5.244624e-15
10	7966052	7974835	NM_006255	PRKCH	0.721138	4.118812e-18	7.136665e-14	7.136665e-15
11	7966052	8027416	NM_003796	C19orf2	0.720635	4.455153e-18	7.719444e-14	7.017676e-15
12	7966052	8063242	NM_006420	ARFGEF2	0.720412	4.612227e-18	7.991605e-14	6.659671e-15
13	7966052	7969935	NM_000123	ERCC5	0.719512	5.303802e-18	9.189898e-14	7.069152e-15
14	7966052	8079662	NM_006321	ARIH2	0.718287	6.410359e-18	1.110723e-13	7.933735e-15
15	7966052	8156026	NM_001098802	CEP78	0.717196	7.581637e-18	1.313670e-13	8.757802e-15
16	7966052	8126588	NM_020750	XPO5	0.715265	1.018417e-17	1.764611e-13	1.102882e-14
17	7966052	8091190	NM_001184	ATR	0.714343	1.171433e-17	2.029742e-13	1.193966e-14
18	7966052	8022110	NM_001143823	ZFP161	0.710638	2.045279e-17	3.543854e-13	1.968808e-14
19	7966052	8116534	NM_032765	TRIM52	0.710334	2.139975e-17	3.707935e-13	1.951545e-14
20	7966052	8147483	NM_178812	MTDH	0.708603	2.767369e-17	4.795021e-13	2.397511e-14
21	7966052	8023165	NM_032124	HDHD2	0.706434	3.808592e-17	6.599148e-13	3.142451e-14
22	7966052	8092564	NM_004593	TRA2B	0.705711	4.234365e-17	7.336884e-13	3.334947e-14
23	7966052	8134180	NM_019004	ANKIB1	0.705568	4.323696e-17	7.491669e-13	3.257247e-14
24	7966052	8166230	NM_018360	TXLNG	0.705165	4.585435e-17	7.945184e-13	3.310493e-14
25	7966052	8018600	NM_014230	SRP68	0.703842	5.558007e-17	9.630359e-13	3.852144e-14
26	7966052	8127109	NM_016513	ICK	0.703448	5.885285e-17	1.019743e-12	3.922090e-14
27	7966052	7904287	NM_001767	CD2	0.703125	6.166612e-17	1.068489e-12	3.957366e-14
28	7966052	8154531	NM_017925	DENND4C	0.702471	6.777589e-17	1.174353e-12	4.194117e-14
29	7966052	7927936	NM_004728	DDX21	0.702182	7.065268e-17	1.224199e-12	4.221376e-14
30	7966052	8090448	NM_003707	RUVBL1	0.702126	7.123117e-17	1.234223e-12	4.114075e-14
31	7966052	8066303	NM_032221	CHD6	0.701937	7.319429e-17	1.268237e-12	4.091089e-14
32	7966052	7909992	NM_015176	FBXO28	0.700155	9.449700e-17	1.637350e-12	5.116717e-14
33	7966052	7907466	NM_018122	DARS2	0.699856	9.861834e-17	1.708760e-12	5.178060e-14
34	7966052	8156263	NM_006717	SPIN1	0.697811	1.318657e-16	2.284837e-12	6.720109e-14
35	7966052	8044849	NM_002830	PTPN4	0.697704	1.338760e-16	2.319669e-12	6.627625e-14
36	7966052	8111286	NM_013235	RNASEN	0.697517	1.374548e-16	2.381679e-12	6.615775e-14
37	7966052	8164177	NM_001006617	MAPKAP1	0.697207	1.436137e-16	2.488394e-12	6.725389e-14
38	7966052	7947434	NM_033406	FBXO3	0.696072	1.684849e-16	2.919337e-12	7.682466e-14
39	7966052	8040142	NM_016207	CPSF3	0.695422	1.845774e-16	3.198173e-12	8.200443e-14
40	7966052	7989128	NM_144571	CNOT6L	0.692505	2.770863e-16	4.801075e-12	1.200269e-13
41	7966052	8052562	NM_006430	CCT4	0.692165	2.904166e-16	5.032049e-12	1.227329e-13
42	7966052	7932160	BC072452	FAM107B	0.692042	2.954313e-16	5.118939e-12	1.218795e-13
43	7966052	8066136	NM_002895	RBL1	0.691779	3.063493e-16	5.308114e-12	1.234445e-13
44	7966052	7976200	NM_006888	CALM1	0.691099	3.364409e-16	5.829511e-12	1.324889e-13
45	7966052	8057554	NM_014412	CACYBP	0.690602	3.602233e-16	6.241588e-12	1.387020e-13
46	7966052	7993889	BC027604	C16orf52	0.690588	3.609508e-16	6.254194e-12	1.359607e-13
47	7966052	8021312	NM_015285	WDR7	0.690411	3.698298e-16	6.408041e-12	1.363413e-13
48	7966052	7954279	NM_153207	AEBP2	0.689821	4.009992e-16	6.948113e-12	1.447524e-13
49	7966052	8111629	NM_153485	NUP155	0.689650	4.104946e-16	7.112640e-12	1.451559e-13
50	7966052	8093130	NM_152617	RNF168	0.688792	4.615315e-16	7.996957e-12	1.599391e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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