[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7292	8071997	NM_000496	CRYBB2		crystallin, beta B2

Fetching correlation data, please wait...
Getting list of correlations for id 7292.
Getting list of p-values for id 7292.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.113 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8071997	8067506	BC137326	C20orf151	0.703038	6.244232e-17	1.081938e-12	1.081938e-12
2	8071997	8019316	NM_006907	PYCR1	0.689201	4.364792e-16	7.562875e-12	3.781437e-12
3	8071997	8004556	NM_018081	WRAP53	0.682033	1.146058e-15	1.985774e-11	6.619247e-12
4	8071997	7955624	NM_002284	KRT86	0.677826	1.994168e-15	3.455295e-11	8.638238e-12
5	8071997	8125568	NM_080680	COL11A2	0.677176	2.170457e-15	3.760751e-11	7.521502e-12
6	8071997	8059028	NM_194302	CCDC108	0.675330	2.758118e-15	4.778991e-11	7.964986e-12
7	8071997	8062695	NM_006275	SRSF6	-0.675072	2.851385e-15	4.940594e-11	7.057992e-12
8	8071997	8098244	ENST00000410789		0.669776	5.612232e-15	9.724315e-11	1.215539e-11
9	8071997	7977418	NM_001134875	C14orf80	0.667024	7.935410e-15	1.374969e-10	1.527743e-11
10	8071997	8016320	NM_203400	RPRML	0.664292	1.115217e-14	1.932336e-10	1.932336e-11
11	8071997	8132832	AK057400	LOC100129427	0.663972	1.160255e-14	2.010374e-10	1.827612e-11
12	8071997	7945712	NM_199292	TH	0.662924	1.320640e-14	2.288273e-10	1.906894e-11
13	8071997	7987511	NM_207380	C15orf52	0.661074	1.657582e-14	2.872093e-10	2.209302e-11
14	8071997	8008736	NM_006151	LPO	0.660525	1.772565e-14	3.071324e-10	2.193803e-11
15	8071997	8164931	NM_001080483	TMEM8C	0.660244	1.834531e-14	3.178692e-10	2.119128e-11
16	8071997	8082928	NM_001002026	CLDN18	0.660057	1.876963e-14	3.252214e-10	2.032634e-11
17	8071997	7937728	NM_001145829	TNNI2	0.659931	1.905808e-14	3.302194e-10	1.942467e-11
18	8071997	7981013	NM_178013	PRIMA1	0.657928	2.430667e-14	4.211617e-10	2.339787e-11
19	8071997	8066451	NM_182970	RIMS4	0.656282	2.964024e-14	5.135764e-10	2.703034e-11
20	8071997	8093807	NM_173660	DOK7	0.655929	3.092554e-14	5.358468e-10	2.679234e-11
21	8071997	8159808	NM_207305	FOXD4	0.654252	3.779636e-14	6.548976e-10	3.118560e-11
22	8071997	8032023	NM_016585	THEG	0.654031	3.880700e-14	6.724090e-10	3.056404e-11
23	8071997	7987701	NM_016642	SPTBN5	0.653649	4.061257e-14	7.036940e-10	3.059539e-11
24	8071997	8036460	NM_004647	DPF1	0.653612	4.079106e-14	7.067867e-10	2.944944e-11
25	8071997	8137783	NM_001097620	TMEM184A	0.653168	4.300608e-14	7.451663e-10	2.980665e-11
26	8071997	8159734	NM_000718	CACNA1B	0.652663	4.565831e-14	7.911215e-10	3.042775e-11
27	8071997	7934553	NM_032772	ZNF503	0.652347	4.740173e-14	8.213298e-10	3.041962e-11
28	8071997	7993024	NM_139170	C16orf71	0.651946	4.970394e-14	8.612202e-10	3.075787e-11
29	8071997	7908612	NM_001105517	FAM58B	0.650487	5.904006e-14	1.022987e-9	3.527542e-11
30	8071997	8130837	NM_024919	FRMD1	0.650064	6.204783e-14	1.075103e-9	3.583676e-11
31	8071997	8096556	NM_015143	METAP1	-0.649327	6.765044e-14	1.172179e-9	3.781223e-11
32	8071997	8075934	NM_014550	CARD10	0.649032	7.002339e-14	1.213295e-9	3.791548e-11
33	8071997	8054092	NM_015348	TMEM131	-0.648935	7.082335e-14	1.227156e-9	3.718655e-11
34	8071997	8052798	NM_014911	AAK1	-0.648921	7.093780e-14	1.229139e-9	3.615115e-11
35	8071997	8164200	NM_012098	ANGPTL2	0.646211	9.723294e-14	1.684755e-9	4.813586e-11
36	8071997	7955551	NM_001130015	ANKRD33	0.645993	9.971971e-14	1.727843e-9	4.799565e-11
37	8071997	8004394	NM_199339	SPEM1	0.644770	1.148394e-13	1.989822e-9	5.377898e-11
38	8071997	7916654	NM_181712	KANK4	0.644527	1.180928e-13	2.046193e-9	5.384719e-11
39	8071997	7970241	NM_000504	F10	0.644367	1.202861e-13	2.084197e-9	5.344094e-11
40	8071997	8086810	NM_003074	SMARCC1	-0.644050	1.247457e-13	2.161468e-9	5.403671e-11
41	8071997	7960764	NM_031491	RBP5	0.643699	1.298741e-13	2.250328e-9	5.488605e-11
42	8071997	8086985	NM_000094	COL7A1	0.643462	1.334645e-13	2.312540e-9	5.506048e-11
43	8071997	7926871			0.642624	1.468939e-13	2.545231e-9	5.919141e-11
44	8071997	8135458	NM_024814	CBLL1	-0.641618	1.647389e-13	2.854431e-9	6.487344e-11
45	8071997	8044634	NM_012184	FOXD4L1	0.641277	1.712537e-13	2.967313e-9	6.594030e-11
46	8071997	8175871	NM_000425	L1CAM	0.639540	2.085221e-13	3.613062e-9	7.854483e-11
47	8071997	8045030	NM_001080527	MYO7B	0.638884	2.245198e-13	3.890255e-9	8.277138e-11
48	8071997	8003719	NM_001098202	HIC1	0.638473	2.351773e-13	4.074918e-9	8.489412e-11
49	8071997	7913450	NM_005529	HSPG2	0.636844	2.823345e-13	4.892010e-9	9.983694e-11
50	8071997	7899911	NM_001134734	C1orf94	0.635254	3.371010e-13	5.840949e-9	1.168190e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation