[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1282	8036460	NM_004647	DPF1		D4, zinc and double PHD fingers family 1

Fetching correlation data, please wait...
Getting list of correlations for id 1282.
Getting list of p-values for id 1282.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8036460	7977418	NM_001134875	C14orf80	0.808687	1.772324e-25	3.070906e-21	3.070906e-21
2	8036460	8086985	NM_000094	COL7A1	0.807669	2.266047e-25	3.926380e-21	1.963190e-21
3	8036460	8156415	NM_006648	WNK2	0.797270	2.566846e-24	4.447574e-20	1.482525e-20
4	8036460	7952752	NM_007037	ADAMTS8	0.790649	1.119820e-23	1.940312e-19	4.850779e-20
5	8036460	7949015	NM_001144936	C11orf95	0.788003	1.988048e-23	3.444691e-19	6.889382e-20
6	8036460	7929315	NM_183374	CYP26C1	0.783977	4.687347e-23	8.121766e-19	1.353628e-19
7	8036460	8027556	NM_002333	LRP3	0.783435	5.253609e-23	9.102929e-19	1.300418e-19
8	8036460	8067506	BC137326	C20orf151	0.783367	5.329128e-23	9.233779e-19	1.154222e-19
9	8036460	8033462	NM_206833	CTXN1	0.781815	7.373459e-23	1.277599e-18	1.419555e-19
10	8036460	8096556	NM_015143	METAP1	-0.779036	1.310248e-22	2.270266e-18	2.270266e-19
11	8036460	7937560	NM_002457	MUC2	0.778679	1.409736e-22	2.442649e-18	2.220590e-19
12	8036460	8073449	NM_014460	CSDC2	0.777173	1.917199e-22	3.321931e-18	2.768276e-19
13	8036460	8153101	NM_152888	COL22A1	0.775300	2.801389e-22	4.853967e-18	3.733821e-19
14	8036460	8013384	NM_000691	ALDH3A1	0.774429	3.337253e-22	5.782459e-18	4.130328e-19
15	8036460	8019316	NM_006907	PYCR1	0.774343	3.395221e-22	5.882900e-18	3.921933e-19
16	8036460	8083071	NM_080862	SPSB4	0.774226	3.475722e-22	6.022383e-18	3.763989e-19
17	8036460	7997801	NM_013278	IL17C	0.774080	3.578530e-22	6.200519e-18	3.647364e-19
18	8036460	8014269	NM_139285	GAS2L2	0.773501	4.018087e-22	6.962139e-18	3.867855e-19
19	8036460	7947991	NM_015231	NUP160	-0.772964	4.471974e-22	7.748589e-18	4.078205e-19
20	8036460	8075016	NM_207644	C22orf36	0.772818	4.603975e-22	7.977308e-18	3.988654e-19
21	8036460	8125568	NM_080680	COL11A2	0.772777	4.641222e-22	8.041845e-18	3.829450e-19
22	8036460	8037563	NM_006663	PPP1R13L	0.772639	4.770645e-22	8.266097e-18	3.757317e-19
23	8036460	8131056	NM_017781	CYP2W1	0.772075	5.334891e-22	9.243765e-18	4.019028e-19
24	8036460	7998910	NM_001103175	CCDC64B	0.771810	5.622886e-22	9.742775e-18	4.059490e-19
25	8036460	7912004	NM_207370	GPR153	0.771735	5.706788e-22	9.888151e-18	3.955260e-19
26	8036460	8006562	NM_033315	RASL10B	0.771613	5.846229e-22	1.012976e-17	3.896062e-19
27	8036460	7896761	NM_152486	SAMD11	0.771530	5.943028e-22	1.029748e-17	3.813883e-19
28	8036460	8153704	NM_031309	SCRT1	0.771242	6.290804e-22	1.090008e-17	3.892884e-19
29	8036460	8075200	NM_012265	RHBDD3	0.770666	7.046008e-22	1.220862e-17	4.209869e-19
30	8036460	7898377	NM_014675	CROCC	0.769676	8.557174e-22	1.482702e-17	4.942339e-19
31	8036460	7992049	NM_207112	HAGHL	0.769495	8.866850e-22	1.536359e-17	4.955997e-19
32	8036460	8000467	NM_001109763	GSG1L	0.768693	1.036944e-21	1.796712e-17	5.614726e-19
33	8036460	8064059	NM_020882	COL20A1	0.768580	1.059824e-21	1.836357e-17	5.564719e-19
34	8036460	8005328	NM_016239	MYO15A	0.768070	1.170327e-21	2.027825e-17	5.964191e-19
35	8036460	8010696	NM_148896	NPB	0.768066	1.171392e-21	2.029670e-17	5.799058e-19
36	8036460	8019693	NM_148896	NPB	0.768066	1.171392e-21	2.029670e-17	5.637973e-19
37	8036460	8149652	NM_005144	HR	0.767428	1.325523e-21	2.296733e-17	6.207387e-19
38	8036460	7913450	NM_005529	HSPG2	0.766442	1.603679e-21	2.778695e-17	7.312354e-19
39	8036460	7995310	ENST00000319817		0.766324	1.640446e-21	2.842401e-17	7.288208e-19
40	8036460	7968265	NM_000209	PDX1	0.765736	1.836530e-21	3.182155e-17	7.955389e-19
41	8036460	8010287	NM_030968	C1QTNF1	0.765670	1.860247e-21	3.223249e-17	7.861583e-19
42	8036460	7931439	NM_006426	DPYSL4	0.765523	1.913245e-21	3.315080e-17	7.893048e-19
43	8036460	8112072	NM_021147	CCNO	0.765209	2.031820e-21	3.520535e-17	8.187290e-19
44	8036460	8079021	NM_001904	CTNNB1	-0.764072	2.524297e-21	4.373850e-17	9.940568e-19
45	8036460	8155661	NM_199135	FOXD4L3	0.763115	3.027720e-21	5.246130e-17	1.165807e-18
46	8036460	8039362	NM_178837	C19orf51	0.762180	3.613091e-21	6.260403e-17	1.360957e-18
47	8036460	8001014	NM_173502	PRSS36	0.762168	3.621411e-21	6.274819e-17	1.335068e-18
48	8036460	8151609	NM_172239	REXO1L1	0.761785	3.892062e-21	6.743777e-17	1.404953e-18
49	8036460	8075934	NM_014550	CARD10	0.761656	3.987422e-21	6.909006e-17	1.410001e-18
50	8036460	8076007	NM_025045	BAIAP2L2	0.761577	4.047353e-21	7.012848e-17	1.402570e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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