[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1527	7990545	NM_001897	CSPG4		chondroitin sulfate proteoglycan 4

Fetching correlation data, please wait...
Getting list of correlations for id 1527.
Getting list of p-values for id 1527.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7990545	8036883	NM_144685	HIPK4	0.747989	4.799490e-20	8.316077e-16	8.316077e-16
2	7990545	7975113	NM_145165	CHURC1	-0.742772	1.190181e-19	2.062227e-15	1.031114e-15
3	7990545	8151842	NM_015496	KIAA1429	-0.729400	1.107796e-18	1.919478e-14	6.398261e-15
4	7990545	8043114	NM_031283	TCF7L1	0.728018	1.384452e-18	2.398840e-14	5.997101e-15
5	7990545	8067521	NM_080473	GATA5	0.727014	1.626583e-18	2.818381e-14	5.636762e-15
6	7990545	8107613	NM_003100	SNX2	-0.726808	1.681083e-18	2.912813e-14	4.854688e-15
7	7990545	8091048	NR_023350	COPB2	-0.724099	2.586587e-18	4.481779e-14	6.402541e-15
8	7990545	8150197	NM_024025	DUSP26	0.718848	5.878455e-18	1.018560e-13	1.273200e-14
9	7990545	7945688	NR_003512	INS-IGF2	0.718526	6.178358e-18	1.070524e-13	1.189471e-14
10	7990545	7964250	NM_006601	PTGES3	-0.718492	6.210809e-18	1.076147e-13	1.076147e-14
11	7990545	7908437	NM_024529	CDC73	-0.717112	7.679758e-18	1.330672e-13	1.209702e-14
12	7990545	7912361	NM_006610	MASP2	0.716246	8.769017e-18	1.519408e-13	1.266173e-14
13	7990545	8147172	NM_003909	CPNE3	-0.715691	9.542988e-18	1.653513e-13	1.271933e-14
14	7990545	7914667	NM_052896	CSMD2	0.715616	9.653212e-18	1.672612e-13	1.194723e-14
15	7990545	7970241	NM_000504	F10	0.715443	9.911245e-18	1.717321e-13	1.144881e-14
16	7990545	8138670	NM_031243	HNRNPA2B1	-0.715278	1.016377e-17	1.761076e-13	1.100673e-14
17	7990545	8042270	NM_001001521	UGP2	-0.714860	1.083014e-17	1.876538e-13	1.103846e-14
18	7990545	8078738	NM_005109	OXSR1	-0.714754	1.100613e-17	1.907032e-13	1.059462e-14
19	7990545	7954173	NM_007178	STRAP	-0.714421	1.157711e-17	2.005966e-13	1.055772e-14
20	7990545	8133809	NM_198467	RSBN1L	-0.714014	1.231248e-17	2.133383e-13	1.066692e-14
21	7990545	8109403	NR_024152	MFAP3	-0.713231	1.386019e-17	2.401555e-13	1.143597e-14
22	7990545	8093112	NM_015562	UBXN7	-0.712125	1.637148e-17	2.836686e-13	1.289403e-14
23	7990545	7922823	NM_025191	EDEM3	-0.712041	1.657723e-17	2.872337e-13	1.248842e-14
24	7990545	8022882	NM_006965	ZNF24	-0.711921	1.687956e-17	2.924721e-13	1.218634e-14
25	7990545	8003758	NM_000430	PAFAH1B1	-0.711668	1.753143e-17	3.037672e-13	1.215069e-14
26	7990545	7936762	NM_001001976	ATE1	-0.711207	1.878474e-17	3.254831e-13	1.251858e-14
27	7990545	7937560	NM_002457	MUC2	0.709388	2.463309e-17	4.268175e-13	1.580806e-14
28	7990545	8031815	NM_173632	ZNF776	-0.709071	2.581812e-17	4.473505e-13	1.597680e-14
29	7990545	8152041	NM_183419	RNF19A	-0.707811	3.110619e-17	5.389770e-13	1.858541e-14
30	7990545	8033674	NM_024690	MUC16	0.706854	3.581263e-17	6.205255e-13	2.068418e-14
31	7990545	8132503	NM_004760	STK17A	-0.706848	3.584562e-17	6.210970e-13	2.003539e-14
32	7990545	7942553	NM_014752	SPCS2	-0.703951	5.471160e-17	9.479879e-13	2.962462e-14
33	7990545	7928752	NM_014394	GHITM	-0.703479	5.858583e-17	1.015117e-12	3.076111e-14
34	7990545	8050565	NM_015317	PUM2	-0.703085	6.202225e-17	1.074660e-12	3.160763e-14
35	7990545	8070655	NM_001025204	U2AF1	-0.702428	6.819787e-17	1.181664e-12	3.376184e-14
36	7990545	7959473	NM_003677	DENR	-0.702365	6.881466e-17	1.192352e-12	3.312088e-14
37	7990545	8152222	NM_015878	AZIN1	-0.701531	7.759305e-17	1.344455e-12	3.633662e-14
38	7990545	8017235	NM_006380	APPBP2	-0.700773	8.650122e-17	1.498807e-12	3.944228e-14
39	7990545	7979367	NM_006544	EXOC5	-0.700679	8.768091e-17	1.519247e-12	3.895505e-14
40	7990545	7933947	NM_022079	HERC4	-0.700550	8.931086e-17	1.547489e-12	3.868723e-14
41	7990545	7927367	NM_001040084	ANXA8	0.700542	8.940547e-17	1.549129e-12	3.778362e-14
42	7990545	7987701	NM_016642	SPTBN5	0.700506	8.987136e-17	1.557201e-12	3.707621e-14
43	7990545	8054804	NM_019044	CCDC93	-0.700213	9.371495e-17	1.623799e-12	3.776277e-14
44	7990545	7896921	NM_152228	TAS1R3	0.700096	9.529055e-17	1.651099e-12	3.752499e-14
45	7990545	7949592	NM_004292	RIN1	0.698583	1.182021e-16	2.048088e-12	4.551307e-14
46	7990545	7932911	NM_004521	KIF5B	-0.698576	1.183189e-16	2.050111e-12	4.456763e-14
47	7990545	8005879	NR_027384	SLC13A2	0.698011	1.281838e-16	2.221041e-12	4.725618e-14
48	7990545	8089729	NM_001015887	IGSF11	0.697598	1.358900e-16	2.354566e-12	4.905346e-14
49	7990545	8097373	BC034253	C4orf29	-0.696268	1.639104e-16	2.840076e-12	5.796074e-14
50	7990545	8100714	NM_001031732	YTHDC1	-0.695950	1.714127e-16	2.970068e-12	5.940135e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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