[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2461	8003824	NM_004937	CTNS		cystinosis, nephropathic

Fetching correlation data, please wait...
Getting list of correlations for id 2461.
Getting list of p-values for id 2461.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8003824	7953321	NM_002342	LTBR	0.558865	5.801494e-10	1.005225e-5	1.005225e-5
2	8003824	7985226	NM_206839	MORF4L1	-0.550390	1.184429e-9	2.052259e-5	1.026130e-5
3	8003824	8152323	NM_001568	EIF3E	-0.547853	1.460922e-9	2.531339e-5	8.437796e-6
4	8003824	8004404	NM_178518	TMEM102	0.532225	5.122307e-9	8.875421e-5	2.218855e-5
5	8003824	7987454	NM_001003940	BMF	0.529597	6.286527e-9	1.089266e-4	2.178533e-5
6	8003824	8002152	NM_005072	SLC12A4	0.521118	1.202881e-8	2.084233e-4	3.473721e-5
7	8003824	8033362	NM_000208	INSR	0.520492	1.260993e-8	2.184922e-4	3.121317e-5
8	8003824	7898483	NM_018125	ARHGEF10L	0.512112	2.350801e-8	4.073233e-4	5.091541e-5
9	8003824	8090420	NM_016372	TPRA1	0.509304	2.885458e-8	4.999634e-4	5.555148e-5
10	8003824	8012539	NM_001010855	PIK3R6	0.500924	5.262283e-8	9.117957e-4	9.117957e-5
11	8003824	8081537	NM_016388	TRAT1	-0.495967	7.451635e-8	1.291145e-3	1.173768e-4
12	8003824	7996318	NM_144601	CMTM3	0.495897	7.488095e-8	1.297462e-3	1.081219e-4
13	8003824	8002470	NM_032821	HYDIN	0.490678	1.073583e-7	1.860198e-3	1.430922e-4
14	8003824	7942439	NM_032871	RELT	0.490208	1.108729e-7	1.921096e-3	1.372211e-4
15	8003824	8086317	NM_031899	GORASP1	0.489913	1.131257e-7	1.960129e-3	1.306753e-4
16	8003824	8007197	NM_017595	NKIRAS2	0.489896	1.132617e-7	1.962485e-3	1.226553e-4
17	8003824	8009568	NM_032646	TTYH2	0.489647	1.151969e-7	1.996016e-3	1.174127e-4
18	8003824	8084219	NM_017644	KLHL24	-0.486021	1.473285e-7	2.552760e-3	1.418200e-4
19	8003824	7906223	NM_015997	C1orf66	0.485984	1.476960e-7	2.559129e-3	1.346910e-4
20	8003824	7958749	NM_005475	SH2B3	0.485516	1.524292e-7	2.641141e-3	1.320570e-4
21	8003824	7941127	NM_006782	ZFPL1	0.482301	1.890738e-7	3.276082e-3	1.560039e-4
22	8003824	7983228	NM_002373	MAP1A	0.481717	1.965677e-7	3.405929e-3	1.548150e-4
23	8003824	7999079	NM_001116	ADCY9	0.480551	2.124012e-7	3.680275e-3	1.600120e-4
24	8003824	8092201	NM_024665	TBL1XR1	-0.479682	2.249725e-7	3.898099e-3	1.624208e-4
25	8003824	8061706	NM_015352	POFUT1	0.478054	2.504755e-7	4.339989e-3	1.735996e-4
26	8003824	7899153	NM_031286	SH3BGRL3	0.476144	2.838878e-7	4.918925e-3	1.891894e-4
27	8003824	8013923	NM_001085454	GIT1	0.475503	2.960177e-7	5.129099e-3	1.899666e-4
28	8003824	8032009	NM_017550	MIER2	0.474034	3.257227e-7	5.643797e-3	2.015642e-4
29	8003824	7930577	NM_033338	CASP7	0.473177	3.443368e-7	5.966323e-3	2.057353e-4
30	8003824	8027352			-0.469540	4.351925e-7	7.540580e-3	2.513527e-4
31	8003824	8069766	ENST00000391177		0.468325	4.703146e-7	8.149142e-3	2.628755e-4
32	8003824	7998510	NM_001287	CLCN7	0.467954	4.815564e-7	8.343928e-3	2.607478e-4
33	8003824	8039180	NM_001081442	LILRB5	0.467903	4.831196e-7	8.371013e-3	2.536671e-4
34	8003824	8053406	NM_017750	RETSAT	0.467382	4.994192e-7	8.653436e-3	2.545128e-4
35	8003824	8139307	NM_021223	MYL7	0.466170	5.393300e-7	9.344971e-3	2.669992e-4
36	8003824	8019316	NM_006907	PYCR1	0.465786	5.525882e-7	9.574695e-3	2.659638e-4
37	8003824	7951826	NM_032725	BUD13	0.465261	5.712481e-7	9.898016e-3	2.675139e-4
38	8003824	8053801	NM_025190	ANKRD36B	-0.463556	6.359940e-7	1.101987e-2	2.899965e-4
39	8003824	7903308	NM_019083	CCDC76	-0.463466	6.396085e-7	1.108250e-2	2.841666e-4
40	8003824	8009796	NM_014738	KIAA0195	0.462067	6.981914e-7	1.209756e-2	3.024391e-4
41	8003824	8019296	NM_016538	SIRT7	0.461902	7.054392e-7	1.222314e-2	2.981255e-4
42	8003824	7982829	NM_181642	SPINT1	0.461619	7.180022e-7	1.244082e-2	2.962101e-4
43	8003824	7942372	NM_000803	FOLR2	0.461067	7.431573e-7	1.287669e-2	2.994578e-4
44	8003824	7947815	NM_001610	ACP2	0.457550	9.241134e-7	1.601211e-2	3.639116e-4
45	8003824	8124551	NR_002936	LOC222699	0.457135	9.480345e-7	1.642659e-2	3.650354e-4
46	8003824	8007561	NM_138387	G6PC3	0.455350	1.057752e-6	1.832767e-2	3.984276e-4
47	8003824	8039120	NM_206818	OSCAR	0.455108	1.073542e-6	1.860127e-2	3.957716e-4
48	8003824	8063097	NM_022104	PCIF1	0.454936	1.084893e-6	1.879795e-2	3.916239e-4
49	8003824	8165258	NM_006412	AGPAT2	0.453137	1.210578e-6	2.097569e-2	4.280753e-4
50	8003824	7944113	NM_014956	CEP164	0.453074	1.215261e-6	2.105682e-2	4.211364e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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